1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAGACCTGCAAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCTTACAATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaattaagtgttggcataaatagtaaatcccattatctcaagtaagattcaggcaatgctataagtcttccttttctacctccag
species | Glycine max |
transcript | GLYMA16G26300.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAEST: gi|208096619|gb|GD893334.1|GD893334
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
EST: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAEST: gi|9986794|gb|BE660902.1|BE660902
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
EST: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATAEST: gi|58021976|gb|CX708717.1|CX708717
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
EST: ATCNTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAG GCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
genomic: ATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaa ... ctacctccagGCAGTGTTAACAAGCATTGTTTTGAAACGTAATGTGACCATGTTGGATATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACCTGCAAGAGAAAGTGATATTCCTGTTAGGGTTAAAAATTCTTACAATCCTAAAGCTCCAGGTACTCTCATCACCAAGGCAAGAGATATGAGCAAGgtttgtagaattaagtgttggcataaatagtaaatcccattatctcaagtaagattcaggcaatgctataagtcttccttttctacctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG