Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgtatccttctgataccatctattttcataatctatagtgtttgcatatggaattcaatggatataattcaagattttatattcatag

Basic information

species Glycine max
transcript GLYMA16G25750.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv04s0023g01040.t01 (Vitis vinifera), 5'ss of exon 14
TAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgtatcct---tctgataccatctattttcataatctatagt-gtttgcata--tggaattcaatggatataattcaagattttatattcatag----
|  |  |||| || | | | ||  | ||||| || || |||| |||||| |||||||| |||||||||||||| || ||| |||||||||| || || ||||||  |   ||| || |  |||||   || ||| | || | | |||  ||  |   ||  |   |    ||   || | |   |  | | |     
TTAGTACAGGCTATCGGATTATCAACATGATGACAGAACCTTGTAGGCTAGTCCGTCGATGTGAAGTGACAGCAATTCTTATTTTGTATGGGCTCCCGAGgtattatatctcttatgctctctatcc-caaaatgtttacttgcttgattagttttgatgtatgtgtcgcaaccaaaaaatccctcctaaaatacag

upper sequence: GLYMA16G25750.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S395_19V6.1 (Physcomitrella patens), 5'ss of exon 7
TAGGAGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGgta---tcctt---ctgataccatctattttcata-atctatagtgtttgcatatgga-attcaatggatat---aattcaagattttatattcatag-----------------------------------------------------------------------------------------------
 |  | |  || |||   | | | || ||   |||||       |  ||    |||| |||||| || || |||||||||||| ||||||| |||||||||||   ||| |   |||||   || ||| |  ||| || ||||   ||    ||| || ||||  |     |   |||| | | | || |   | ||                                                                                                
GAAAATCGAGAAACCCAATGAGATATTTGCGGACTGAAAAGCAGAAACTAACTCGTCATTGTGAGGTCACTGCCATACTTGTTCTGTATGGACTTCCTAGgtaagttcccttgtctgatgatatatatatatatatatatatataattatgttatcgagattcgttatccttgccaatttatgctattgttcacctacctagctgcatgtaaaatgccactgcagtttgttcccaatttttctgttcatttcccatcgttgtttactgatcgggggttgtttgaattctgcag