Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaattaattctagccttttcaggtcagaaggcatggaacctgtttgatgtccagctttttttataattgattactgttggaatatatggaaat...

Basic information

species Glycine max
transcript GLYMA16G23870.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g03410.2 (Oryza sativa), 5'ss of exon 8
AGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaattaattctagccttttcaggtcagaaggcatggaacctgtttgatgtc--cagctttttttataattgattactgttggaatatatggaaat
|||||||||||||||||  ||||| ||| |||||||||||||  ||  ||||||||| |||||||| || || || || || || |||||||| ||||||||||      |            || ||  ||      ||    |  |   | |||      | || ||| ||  |                          
AGAAGGAGGAGAAGCATCTGAGATCCCTGTTGATATATCTGTATTGTCCAACATGCGTCAGTTTGTCAAGTACAGCCGTTTTAAGCAATTTGCTCTGAGGgtaaattttgtgtgcaactaatcttacatatcttttctcactatatgttcctaatgatgttggtttctttcatgctcag-----------------------

upper sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G365035_T01 (Zea mays), 5'ss of exon 8
AGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaattaattctagccttttcaggtcagaaggcatggaacctgtttgatgtccagctttttttataattgattactgttggaatatatggaaat
|||||||||| | ||||  || || ||  | |||||||| ||  |    || ||||| |||||||||||||| ||||| ||||| ||||||||  | ||||||||  |||        |   |||| | |   |  |||||  |     |  |||||  |  ||  || | |  |||||  |  |  ||  | || |   
AGAAGGAGGAAAGGCATCTGAAATACCCTTGGATATATCAGTATTACATAATATGCGTCAGTTTGTGAAATACAGTCGTTTCAAGCAATTTGCTTTAAGGgtaagttaaaagtgcctgaattttttgaagcttg--ggcat--atttcatgagatgttaacattgattcaaa--tgatt--taatacaacttttgtag--

upper sequence: GLYMA16G23870.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G17890.1 (Arabidopsis thaliana), 5'ss of exon 8
AGAAGGAGGAGAAGCATTGGAGATTCCTATTGATATATCTGTCCTGAGCAACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaattaattctagccttttcaggtcagaaggcatggaacctgtttgatgtccagctttttttataattgattactgttggaatatatggaaat
|||||||||||| ||||  |||||||| || || |||||||| |||| ||||||||| ||||||||||||| ||| ||  | || ||||| ||  | |||||||   | |  |    |     |||||  |    ||       |  |||||| |       || ||  || | | ||   | ||||  ||         
AGAAGGAGGAGATGCATCTGAGATTCCCATAGACATATCTGTTCTGAACAACATGCGTCAGTTTGTGAAATTTAGCCGCCTTAAGCAATTCGCTTTAAGGgtaatcaagaagagagatttgtgtttcattt---gagtttcttgatgtgtttgtt------tttattaaatgagttatgctttttggtctag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208136736|gb|GD939696.1|GD939696
EST:     ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG                         GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
EST: gi|193364409|gb|FK328914.1|FK328914
EST:     ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG                         GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAA
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAGATCAA
EST: gi|193432383|gb|FK394769.1|FK394769
EST:     TGAAATATAGTCGATTCAAACAAATTTGCACTGAGG                         GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAAGATCA
genomic: TGAAATATAGTCGATTCAAAC-AATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATAT-AAAAGATCA
EST: gi|207825702|gb|GD797329.1|GD797329
EST:     ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG                         GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
EST: gi|208085782|gb|GD880636.1|GD880636
EST:     ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGG                         GCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG
genomic: ACATGCGGCAGTTTGTGAAATATAGTCGATTCAAACAATTTGCACTGAGGgtaagagaaa ... taccctgcagGCATTGGCTAGCACACTTAATGAAGAAGAGTTGGCTGATATAAAAG