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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttag

Basic information

species Glycine max
transcript GLYMA16G19560.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 8
GAAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaa-actatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttag
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GAAAGAAATTCTGGAATTTATTCCACTTGCAGCCCATGCGTGACCAAAAGgtggctatgagatacttattctatataactcttaatttggttttggatgaagagaatgtatttatgctgcagcttccttcatgactttccaagtctcctgttatattcgtag--------------

upper sequence: GLYMA16G19560.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ32904 (Selaginella moellendorffii), 5'ss of exon 9
GAAAAAAGTTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCAAAAGgtgaaagtgatactgttatgctagaaaacaaataatttgaacataaacattcaatatctattaaactatatattgtcttcccccctttctagtttctaatgttattctcaatgatttgtatttag
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GGAAGCCTTTCTGGAATTTGTTTCACTTGCAACCCATGAGAGACAACAAGgtgcccttgtttctg-----ctgcaaaccatctagat---acgctaatcttgtatatgcatgcag------------------------------------------------------------