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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatagtctgtactgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctctgagtgttatctgtattgcttttggttacata...

Basic information

species Glycine max
transcript GLYMA16G19230.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatagtctgtactgtacattccaaatgggatgttatctgtattgaagttaaagtttctacctctgagtgttatctgtattgcttttggttacata----------
 |||||||  ||||| ||||||||||| || || ||||| ||||| |||||||||||||| || |||| ||| |  ||||  || | | |         |   || | | | |||   | || ||     |   | |  |  ||||  ||      || |||  |           
ATGGGGAGCTACTCTAATGAACTCTTTCCTCTTCAATGTCGGCCTCATTCTTCTTTGTTCAATCAGgtaagtctc-tctggtctcttcttct-------gcctttgtatctgttgggatcaa-gtgcactctgataaacgg-atctagatcaagcatgtttatgtgcatacattaa

upper sequence: GLYMA16G19230.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 11
GTGGGGAGGAACTCTCATGAACTCTTTTCTGTTTAATGTGGGCCTTATTCTTCTTTGTTCCATTAGgtcagtatagtctgtactgtacattccaaatgggatgttatctgtattgaagttaaagtttctac------ctctgagtgttatct-gtattgcttttggttacata---------------------------------------------------
|||||| |  ||||| |||||||| ||||| ||||||||||| |||||||| || |||||||| ||||  | ||  |  || || || ||||   |   ||| | || ||  |||     |      | |       |||| | |||||| |  | | |  | |  || || |                                                   
GTGGGGTGCCACTCTTATGAACTCCTTTCTTTTTAATGTGGGACTTATTCTCCTGTGTTCCATCAGgtttgcatgtttagtcctctaaattcattaacagatataat-tgggttgggaccagcaccacaaggggggactcttactgttattttatgtagaatatatttccagaccttggtagatgtttatctataatcattgttgttggctcctccaatttcag