Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCGATACTATAGGTCACCTGAGGTTCTTCTTGGATATCAgtatcctaattgatgaaatcagtagctgatgcctttcttttcaagcatttttgctttttcattattttattgctttacctttctgttagctcgtcatctt...

Basic information

species Glycine max
transcript GLYMA16G18110.1
intron # 10
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18110.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 5'ss of exon 7
AGTCGATACTATAGGTCACCTGAGGTTCTTCTTGGATATCAgtatcctaattgatgaaatcagtagctgatgcctttcttttcaagcatttttgctttttcattattttattgctttacctttctgttagctcgtcatctt-
||||||||||||||||| ||||| |||||||| || ||||||||||||  || ||||||    ||| |  |||||||| | || |  || | |  ||  | |||| ||| |    |||   || ||| ||||| |   |   
AGTCGATACTATAGGTCTCCTGAAGTTCTTCTCGGCTATCAgtatccttcttaatgaaactcctagatcttgcctttcatatctatgatctct-tttagtgattaatttttcatgttataattatgtcagctcctttccagt