Sequence
atgc intronic sequence ATGC exonic sequenceGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaacttatgattaataattgagtaattcttgttgcatgttgtgctgtactctctctctctctctcttcctggtctttaaaggttaatatctat...
Basic information
species | Glycine max |
transcript | GLYMA16G18030.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 12
GATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtagg--tacaacttatgattaataattgagtaattcttgttgcatgttgtgctgtactctctctctctctctcttcctggtctttaaaggttaatatctat-
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GATCTTCGTCTTGTGAGAGACAAATTCACTCATGTTTCACGAGGATTTGCATTCGTGCATTTCTATTCGgtagggtctcaaagccaagttggttgttgaact-tactccttaaactctctcttctgct-tcgcttttcccttactgatgat-ttaaattgcaagtgtgcctt
upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 10
GATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaacttatgattaataattgagt--aattcttgttgcatgttgtgctgtactctctc---tctctctctcttcctggtctttaaaggttaatatctat
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GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCGgtatgcccacttaactggtttgagccagtttgaatttcttttctattagactttgaaccctatgaagtgagaacatgtttctgaggttttagg--taacatg---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7285101|gb|AW597588.1|AW597588EST: TCTCAAGGGGATTTGCATTTGTACACTTTTATTCG GTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAA
genomic: TCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaa ... ttttgtttagGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaacttatgattaataattgagtaattcttgttgcatgttgtgctgtactctctctctctctctcttcctggtctttaaaggttaatatctat
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