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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaacttatgattaataattgagtaattcttgttgcatgttgtgctgtactctctctctctctctcttcctggtctttaaaggttaatatctat...

Basic information

species Glycine max
transcript GLYMA16G18030.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 5'ss of exon 12
GATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtagg--tacaacttatgattaataattgagtaattcttgttgcatgttgtgctgtactctctctctctctctcttcctggtctttaaaggttaatatctat-
||||| ||||||||||||||||| || |||||||| ||| | ||||||||||| || || || |||||||||||    |||       ||  |  ||||    | ||  ||  |   | |  | | || || || |  |  |  |  || | || ||  |  | | |   | 
GATCTTCGTCTTGTGAGAGACAAATTCACTCATGTTTCACGAGGATTTGCATTCGTGCATTTCTATTCGgtagggtctcaaagccaagttggttgttgaact-tactccttaaactctctcttctgct-tcgcttttcccttactgatgat-ttaaattgcaagtgtgcctt

upper sequence: GLYMA16G18030.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 5'ss of exon 10
GATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaacttatgattaataattgagt--aattcttgttgcatgttgtgctgtactctctc---tctctctctcttcctggtctttaaaggttaatatctat
||||| || |||||  |||| || || |||||||| ||||||||||||||||||||||| ||| |||||||| |  ||  | |    |   |      |  ||||  | ||  ||       || || || |    |       | || |||   ||| | |  ||| ||    
GATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCGgtatgcccacttaactggtttgagccagtttgaatttcttttctattagactttgaaccctatgaagtgagaacatgtttctgaggttttagg--taacatg---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7285101|gb|AW597588.1|AW597588
EST:     TCTCAAGGGGATTTGCATTTGTACACTTTTATTCG                         GTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAA
genomic: TCTCAAGGGGATTTGCATTTGTACACTTTTATTCGgtaggtacaa ... ttttgtttagGTGGAGGATGCTACCAAAGCTCTTGAGGCAACGAATGGAACTATGCTTGAA