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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagttttactttttttacttaacagtttactcttgttccccttttttcaactaatagaatgttacgtgttcatttttctgtttgaattctttttttgtag

Basic information

species Glycine max
transcript GLYMA16G17580.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208205518|gb|GE004963.1|GE004963
EST:     ATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: ATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193688679|gb|FK628748.1|FK628748
EST:     AAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: AAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|207751715|gb|GD723624.1|GD723624
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193406247|gb|FK370586.1|FK370586
EST:     TGATCCCATCCTAGTAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TGATCCCATCC-AG-AAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193667314|gb|FK613500.1|FK613500
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193521415|gb|FK478972.1|FK478972
EST:     CCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: CCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193479622|gb|FK448145.1|FK448145
EST:     ATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: ATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|208062337|gb|GD857685.1|GD857685
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|208091432|gb|GD885893.1|GD885893
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|208141387|gb|GD936135.1|GD936135
EST:     TCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193474066|gb|FK440147.1|FK440147
EST:     ATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: ATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193508916|gb|FK465512.1|FK465512
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|208281582|gb|GE078098.1|GE078098
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193429244|gb|FK394934.1|FK394934
EST:     CTCTACACTTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCTGCAGAGGCTCTT
genomic: CTCTACAC-TGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|12690052|gb|BG156388.1|BG156388
EST:     CTCTACACTGAACCCATTCAGAAATGATGATGCCATCAGGCCT-GTGACA                         TCACCTTGTTCATGG
genomic: CTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAG-CCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGG
EST: gi|193710657|gb|FK646869.1|FK646869
EST:     CCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: CCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
EST: gi|193698058|gb|FK635769.1|FK635769
EST:     TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACA                         TCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT
genomic: TCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagtt ... ttttttgtagTCACTTTGTTCATGGGATCCCTGCAAGAGACCAACAGCAGCAGAGGCTCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGCTAGTGTACATCTCTCTACACTGATCCCATCCAGAAGTGATGATGCAATCAGCCTTGTGACAgtaagtagttttactttttttacttaacagtttactcttgttccccttttttcaactaatagaatgttacgtgttcatttttctgtttgaattctttttttgtag

- - - - - - - - - - - - - - - - - - AGAAGT