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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTTTCCCACAATATGTGGCATCACATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattattctgtagctcaagaagtttcagtttgtttcaagagtggtgttgctttagaatatataggccatataagaaattttttaagccatgttata...

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6070525|gb|AW099912.1|AW099912
EST:     ATATCAGTACTCCAATCTTCGGTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6455108|gb|AW185791.1|AW185791
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|5753570|gb|AI960857.1|AI960857
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6666292|gb|AW277751.1|AW277751
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6668069|gb|AW279520.1|AW279520
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|7589651|gb|AW705421.1|AW705421
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6667401|gb|AW278852.1|AW278852
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6724652|gb|AW309107.1|AW309107
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6667540|gb|AW278991.1|AW278991
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6455152|gb|AW185835.1|AW185835
EST:     TATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: TATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|151394400|gb|EV264271.1|EV264271
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCCTGATCCCAGTGACAGTTGGCA
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTG-CTGATCCCAGTGACAGTTGGCA
EST: gi|6455706|gb|AW186389.1|AW186389
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6455546|gb|AW186229.1|AW186229
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCNTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6455060|gb|AW185743.1|AW185743
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6668142|gb|AW279593.1|AW279593
EST:     TCAGTACTCCAATCTAT-GATTGTAA-TGCAGCCTATGACTTCATG-CAG                         ATTCAGAACATTTTTGTACCT
genomic: TCAGTACTCCAATCT-TCG-TTGTAAATGCAGCCTATGACT-CATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCT
EST: gi|6668150|gb|AW279601.1|AW279601
EST:     CAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: CAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|10255077|gb|BE822843.1|BE822843
EST:     ATATCAGTACTCCAANCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|7589195|gb|AW704974.1|AW704974
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|298163578|gb|HO012311.1|HO012311
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTCTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|5753462|gb|AI960749.1|AI960749
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT
EST: gi|6341492|gb|AW164316.1|AW164316
EST:     ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAG                         ATTCAGAACATCTTTGTACCTGGCTCTGCTGATTCCAGTGACAGTTGGCAT
genomic: ATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattat ... tttgattcagATTCAGAACATCTTTGTACCTGGCTCTGCTGATCCCAGTGACAGTTGGCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTTTTTCCCACAATATGTGGCATCACATATCAGTACTCCAATCTTCGTTGTAAATGCAGCCTATGACTCATGGCAGgttggattattctgtagctcaagaagtttcagtttgtttcaagagtggtgttgctttagaatatataggccatataagaaattttttaagccatgttata

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