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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGATTTTGCAAACCACAATGCTTTTGAATTGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaattgcataaaggctgacacagtcacattactcacatacatcttgaagattgttatgttctatatttctaattattaatgcattattgtgtcag

Basic information

species Glycine max
transcript GLYMA16G08460.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813658|gb|BI785933.1|BI785933
EST:     TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAG                         GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
genomic: TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaatt ... attgtgtcagGGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
EST: gi|19348065|gb|BM892597.1|BM892597
EST:     TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAG                         GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
genomic: TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaatt ... attgtgtcagGGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
EST: gi|19453158|gb|BM954568.1|BM954568
EST:     TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAG                         GGGACTGCATCTGTTTTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
genomic: TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaatt ... attgtgtcagGGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
EST: gi|14990386|gb|BI316059.1|BI316059
EST:     TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAG                         GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
genomic: TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaatt ... attgtgtcagGGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
EST: gi|19053118|gb|BM731785.1|BM731785
EST:     TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAG                         GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
genomic: TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaatt ... attgtgtcagGGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
EST: gi|6341574|gb|AW164398.1|AW164398
EST:     TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAG                         GGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT
genomic: TGCTTGCAAAATATGGCACAACTCATCTTGTTTTCAACGATGATATTCAGgtactaaatt ... attgtgtcagGGGACTGCATCTGTCGTTCTTGCTGGGGTCGTGGCAGCCTTGAAGCTCATT