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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctctttccattcaattttcatgggaattattactctcttctgtcatttttttctgcccagtaattctgacacaaactaatcaatatcagtacca...

Basic information

species Glycine max
transcript GLYMA16G06850.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 9
----------------------------GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtg---tgcctctttccattcaattttcatgggaattattactctcttctgtcatttttttctgcccagta-attctgacacaaactaatcaatatcagtacca----------------------------
                            ||| | || |||||||| |||||||| || || ||||| | ||||||||||||| | ||||||||||| |||||    | ||| | || ||||  |     |    | |||    |   |     ||  | |  | |  ||   ||| ||    |  |   |     | ||||| |                            
ATTTAATGAACTGTTGCTTCTTCTGCAGGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCTCTTAAGCCTGAGCACATTAGAGATGAGAAAGTCAAGgtactttacctttctctattctctacatgtcaatactatattgcagcttgccaatactataatactaagagtattatgttttagtccgttt--ctttagtactaaataaaaccagttccctgttaatgccag

upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcc--tctttccattcaattttcatgggaattattactctcttctgtcatttttttctgcccagtaattctgacacaaactaatcaatatcagtacca
||||||||| | ||||| ||||| |||||| | ||||| |  |||||||| || |||||||||||||||||||||  |   |  ||   || |    |  | |  ||| |  ||   ||  ||    | |||   |  | |   | |||   | |    ||| | |  |  |  
GTTCTTTGCCTTGTTGCCATGGAGAAACCAATATCTCTTAAACCTGAGCATATCCGGGATGAGAAAGTGAAGgtgaacaaatacttttcttgaccactttttgccattctatctggttttcgttgcctcttttatctgaattcatatgattgagaacc-tcactgtttgatct-

upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: AT3G27300.2 (Arabidopsis thaliana), 5'ss of exon 11
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtg-----------------tgcctctttccattcaa-ttttcatgggaattattactctcttctgtcatttttttctgcccagtaattctgacacaaactaatcaatatcagtacca--------
||||||||| | || || ||||| |||||| | ||||| |  || |||||||| |||||||||||||||||||||                   | |||||   |||||  |||  | | |   | |  | |||||  |    |||| | ||| | ||||  | | |  |||| |   || ||   |           
GTTCTTTGCCTTGTCGCCATGGAGAAACCAATCTCTCTTAAACCCGAGCACATCCGGGATGAGAAAGTGAAGgtgattacagttttcttgatcacatctttagtttcaaacttttgtagaatcaagtgatatcttcatttgcatttt-cagccaattaatattaataacaactgactgatttcttaaatgaacttcag

upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 10
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctctttccattcaattttcatgggaattattactctcttctgtcatttttttctgcccagtaattctgacacaaactaatcaatatcagtacca-
|| |||||| ||||||| ||||| || || || |||||||  ||||||||||| || ||||||||||||||||||      ||   | ||   |  |||   | | ||      ||  | |  ||| ||  |  | |  |||| ||     | ||  | |  ||||  |  | 
GTCCTTTGCCTGGTTGCCATGGAGAAGCCCGTCTCTCTCAAACCTGAGCACATCCGAGATGAGAAAGTGAAGgtgcatactttgatactct-ctcacataaaactcataggcaactgttttattttattatttactaaaaattttgttgacatcttctaataatcaaaataaa

upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S222_130V6.3 (Physcomitrella patens), 5'ss of exon 10
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctctttccattcaattttcatgggaatta--ttactctcttctgtcattttt---ttctgcccagtaattctgacacaaactaatcaatatcagtacca
||||| ||  |||| || ||||| ||||| ||||||||||| ||||||||  |||||||||| ||||| |||||  ||    |    ||  |||| ||    ||||    | ||  | | |||  ||  |   |||||   | ||    |  |||  ||                  
GTTCTGTGTCTGGTAGCCATGGAGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaatctttttgcatttgcaatacaattcacctgcttgcatgtgtggttcatcaattctgattattatacgtttcacggacag----------------

upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S192_39V6.4 (Physcomitrella patens), 5'ss of exon 10
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtg-----cctctttccatt-----caattttcatgggaattattactctcttc-tgtcatttttttct------gcccagtaattctgacacaaactaatcaatatcagtacca------------------------------------------------------------
 |||| ||  |  | || |||||||||||| |||| ||||| |||||||| ||||||||||||||||| |||||  |      || | |  |||     ||||  |  | | |   | | ||   | | | |||| ||||  |      |    || |||      ||    | |   |  |  ||| |                                                            
ATTCTGTGTCTTTTGGCCATGGAAAAACCAATTTCCCTCAGTCCTGAGCATATTCGGGATGAGAAAGTCAAGgtaaggataatctttctggatttgcagcaatacttgttgtaccaaatgcttcatacatttcatgttttcttattgtagttgtgtgattggtttgcatgaaactgctttccgatactaattaagcttcaccattacactttttaatttgtttcaggttgtgatgtttttggtggtcag

upper sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
lower sequence: PP1S73_244V6.1 (Physcomitrella patens), 5'ss of exon 8
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct--ttccattcaattttcatgggaattattactctcttctgtcatttttttctgc-ccagtaattctgacacaaactaat-caatatcagtacca------------------------------------------------------------------------------------------
|| || |||||||| || ||||| ||||||||||| || || || ||||||||||||||||||||||| |||||| |  |    | ||  | ||| |  ||   |||  ||||  |||   |  | |  | | | | ||  ||    || || |   |  |   | || |  |||                                                                                           
GTGCTGTGCTTGGTGGCCATGGAGAAACCAGTTTCACTAAGTCCGGAGCACATTCGGGATGAGAAAGTCAAGgtgcggttacagtccctgtgaatatggatttcaat--ttaccttctctagcaagtgctatatacacctttaggcttgccaaattgttgtatgaaatgaaaaccgcatcaagtataggttacaactagagcttttctaatctatataagaaagattatcctgacctgtcttcctgttctgttctataatgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566164|gb|AW233801.1|AW233801
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|15815763|gb|BI788038.1|BI788038
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|7925329|gb|AW831416.1|AW831416
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|58023690|gb|CX710431.1|CX710431
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTTGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|254331186|gb|GR843305.1|GR843305
EST:     AAAAACCAGTTTCTCTCAG-CCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTAT-AATGATGAT
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGAT
EST: gi|37995859|gb|CF807448.1|CF807448
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|37995462|gb|CF807051.1|CF807051
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|15661712|gb|BI699083.1|BI699083
EST:     CAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: CAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|58020056|gb|CX706798.1|CX706798
EST:     TGAGCACATTCGGGATGAGAAAGTGAAG                         GTTC-TGAAATCAGTGCTCCCTATTAATGATGATGAGG-TGTTTC-TGGAC
genomic: TGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTG-AATCAGTGCTCCCTATTAATGATGATGAGGTTG-TTCTTGGAC
EST: gi|16348742|gb|BI974337.1|BI974337
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|37994622|gb|CF806296.1|CF806296
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
EST: gi|17519559|gb|BM188601.1|BM188601
EST:     AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAG                         GTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA
genomic: AAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctct ... gaaagtgcagGTTCTTGAATCAGTGCTCCCTATTAATGATGATGAGGTTGTTCTTGGACAA