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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTGTTTTAGCTCCTTCTGTAAAATCCGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggcttattaatgtctatgatgtctgaatatatggccattggtaattttacacactgccaagtctaatttacagaggcatacagcagatggattc...

Basic information

species Glycine max
transcript GLYMA16G05470.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209711509|gb|BW681445.1|BW681445
EST:     GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAACCAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
EST: gi|12774131|gb|BG239058.1|BG239058
EST:     GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCT
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCT
EST: gi|209716471|gb|BW653885.1|BW653885
EST:     GAGAAGAAAGTACGTTCTATCCTGGAAGGGTTGACTGATAGCACAAACAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
EST: gi|27426730|gb|CA938250.1|CA938250
EST:     AG-ATAATAGTACATTCTATCCTTGAAGGGTTGACTGATAGCACAAACAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
genomic: AGAAGAA-AGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
EST: gi|213611085|gb|DB974987.1|DB974987
EST:     AGAAGAAAGTACGTAT-TTTCTTTGAAGGGTTGACTGATAGCACAAACAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
genomic: AGAAGAAAGTACGT-TCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
EST: gi|213591127|gb|DB979374.1|DB979374
EST:     GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
genomic: GAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
EST: gi|213611121|gb|DB974995.1|DB974995
EST:     TTGAAGGGTTGACTGATAGCACAAACAG                         TGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC
genomic: TTGAAGGGTTGACTGATAGCACAAACAGgcaagtggct ... gtttgtgcagTGCATACTGGAAGACCGAGGATGAAGTAGGTGCCGGGATGGCTGGCCTAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCATGTGTTTTAGCTCCTTCTGTAAAATCCGAGAAGAAAGTACGTTCTATCCTTGAAGGGTTGACTGATAGCACAAACAGgcaagtggcttattaatgtctatgatgtctgaatatatggccattggtaattttacacactgccaagtctaatttacagaggcatacagcagatggattc

- - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG