Sequence
atgc intronic sequence ATGC exonic sequenceGACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGGgtatttatattaattattataaatttccacataaaatgtatttagtggtgtgtattttataatgtttttggctttgggttttattgtcag
Basic information
species | Glycine max |
transcript | GLYMA16G05340.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G08660.1 (Arabidopsis thaliana), 5'ss of exon 10
GACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGGgtatttatattaattattataaatttccacataaaatgtatttagtggtgtgtattttataatgtttttggctttgggttttattgtcag
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GACGCGTTACTTTTCCACGCCAAGGAAAGGGCACAACCCACTTCAAGGAAGGGCATACTACCAACTTCTAGAGTGTCTTGGTgtacagata--acttgttaaaaccataattctactttgctctaatcgttaaactttttgtggtctctctgaata-aatcaagcttggcag
upper sequence: GLYMA16G05340.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv14s0068g01150.t01 (Vitis vinifera), 5'ss of exon 10
GACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGGgtatttatattaattattataaatttc-cacataaaatgtatttagtggtgtgtattttataatgtttttggctttgggttttattgtcag---------------------------------------------
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GACCCGATACTTCTCTACACCAAGGAAAGGACACAATCCACTTCAAGGAAGGGCATATTACCAGCTCCTAGAGTGCCTTGGGgtaggaatttttctttttccttttttaacccaaataatatgtttacaaat-tcttttctgcgaagacattatacatgtatatatgaaacaaattatgatttcaaaatgacttattcctagggtttatgcttgtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298181752|gb|HO025927.1|HO025927EST: ACGACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGG GTAATTAGAATTCACTCTCCCATGAGGTCTAAGAGGATGGAAGACTGGTCA
genomic: ACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGGgtatttatat ... ttattgtcagGTAATTAGAATTCACTCTCCCATGAGGTCTAAGAGGATGGAAGACTGGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACAAGATACTTCTCTCAGCCTAGGAAGGGACACAACCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGTCTTGGGgtatttatattaattattataaatttccacataaaatgtatttagtggtgtgtattttataatgtttttggctttgggttttattgtcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCA