Sequence
atgc intronic sequence ATGC exonic sequenceCACAGATGCCCGAAGGGCAATCTTTTGTATAATAATGAGTGGGGAGGACTATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagcctttcatttccttcatttttttaaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacag
Basic information
species | Glycine max |
transcript | GLYMA16G04250.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g05450.1 (Oryza sativa), 5'ss of exon 8
CACAGATGCCCGAAGGGCAATCTTTTGTATAATAATGAGTGGGGAGGACTATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagc---ctttcatttccttcatttttttaaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacag
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CACTGACATACGAAGAGCAATCTTCTGCATTATAATGAGTGCTGAGGACTATGTAGATGCTTTTGAGAAGCTCTTGAGGTTGGACCTTTCCGGGAAGCAGgtgtgctatcttctgtaagttccattgttttg--ctcgtgtctctctcagtattacctatgccatttcctctatttgcatgaag--
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G111138_T03 (Zea mays), 5'ss of exon 9
CACAGATGCCCGAAGGGCAATCTTTTGTATAATAATGAGTGGGGAGGACTATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagcctttcatttcct------tcatttttttaaactttagaaatgtttta-tttcaattctgcagccttctatct---tgtgatatacag
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CACTGACATACGAAGAGCAATCTTTTGTATTATAATGAGTGCTGAAGACTATGTAGATGCTTTTGAAAAGCTCTTGAGGCTGGGCCTTTCTGGGAAGCAGgcatgcatcaatgttcctgaagattagttgtcttgttgttcatgtatttcacaatattattgatgtatgccttttcctgcgtatgatatgcag
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv08s0056g01280.t01 (Vitis vinifera), 5'ss of exon 9
CACAGATGCCCGAAGGGCAATCTTTTGTATAATAATGAGTGGGGAGGACTATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagcctttcatttccttcattttt--ttaaactttagaaatgttttatt--tcaattctgcagccttctatcttgtg-atatacag
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CACAGATGCCAGAAGGGCAATCTTTTGTATAATAATGAGTGGAGAAGACTACCTTGATGCATTTGAGAAGCTTCTGAGGTTGGCTTTGGCTGGGAGGCAGgt--gctaatggtttctttcattattaatttttttttttttttgttttgttcttccatttcgtgatacttactcgtgtgtatttacag
upper sequence: GLYMA16G04250.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv05s0049g01380.t01 (Vitis vinifera), 5'ss of exon 9
CACAGATGCCCGAAGGGCAATCTTTTGTATAATAATGAGTGGGGAGGACTATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgta---agcctttcatttccttcatttttttaaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacag
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CACAGATGCCAGAAGGGCAATCTTTTGTGTAATAATGACTTCAGTGGATGTCCTTGATGCATTTCAGAAACTTCTGAGGTTGGATTTGCCTGGGAAGCAGgtagtaaccccgtggtttcttttattattcttttgtttactgctcttccatctcg---caatactcaactcttatgttatcttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192301276|gb|FG990196.1|FG990196EST: ATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAG GACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTT
genomic: ATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagccttt ... tgatatacagGACAGAGATATCATGCGGGTTCTTGTGGAGTGTTGCTTGCAAGAGAAAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACAGATGCCCGAAGGGCAATCTTTTGTATAATAATGAGTGGGGAGGACTATCTTGATGCATTTGAGAAGCTTCTAAGATTGGAGTTACCAGGCAAGCAGgtaagcctttcatttccttcatttttttaaactttagaaatgttttatttcaattctgcagccttctatcttgtgatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG