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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttgcatcttttgattgattttattattgcttgtagtgtattttctataacctatacagggcctcataattgttgaagataat...

Basic information

species Glycine max
transcript GLYMA16G03970.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G109651_T01 (Zea mays), 5'ss of exon 9
ACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttgcatcttttgattgattttattattgcttgtagtgtattttctataacctatacagggcctcataattgttga--agataat---------------------------
|| ||||||||||| || ||| |||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | |||||||||||| | | |  |  |  |     |   | | |||  |       || | || |||| |   |   | |   |   |||  |  ||  ||      | ||                           
ACTGGGAGGAAACCAAGTGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtcaagatgcacatgagagatctcgaacttattcaacggcctattat-gtatattcttctttgtcaacctacaaccttttgttttatgttttagtgatggcatcaactatgttttacgtttgcag

upper sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G096389_T03 (Zea mays), 5'ss of exon 10
ACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatgctaaagttttgcatcttttgattgattttatta-ttgcttgta-gtgtattttctataacctatacagggcctcataattg-----ttgaagataat------------------------
|| |||||||| || |||||| |||| |||||||||||||||||  |||| ||  |||||||   ||| | | | ||| | ||||||||||||   | |     |  |     |   | | |||  |  | | | |  || || |||| ||| |   | |   | | |||  |  ||      ||   |||                           
ACTGGGAGGAAGCCAAGCGGATTATGTGGTGCAGCATTATACATTGCTGCACTCTCTCATGGGTGTAATTACACCAAGGCAGATATTgtaagtccagatgctcatgagatatctcgaacttattcaacaaatcgatattatgtatattctcttttgtcgacctatgaccttctgttttatactttagtgatggcatcaactatgttttacatttgtag

upper sequence: GLYMA16G03970.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G09360.1 (Arabidopsis thaliana), 5'ss of exon 10
ACAGGGAGGAAACCTAGCGGACTATGCGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATTAAGTGCTCTAAGCCGGATATTgtaagttatg-----ctaaagttttgcatc-ttttgattgattttattattgcttgtagtgtattttctataacctatacagggcctcataattgttgaagataat-
|| ||  |||| ||||| ||| |||| || |||||| | |||| | |||||||| |||||||||| |||||||||||| | ||||||||||| ||||     ||| |       ||  ||||   |||    |  | || ||      |   |||  |||  ||     |   |  |   | ||  |  |    
ACCGGCCGGAAGCCTAGTGGAATATGTGGAGCAGCACTTTACACAGCTGCTCTTTCTCATGGTATCAAGTGCTCTAAGACAGATATTgtaagatatgattggctataaagaaatattgttttagatgagaggaaaagtgttttagcctttaattcactaatttagtactgatttggtgtgttttctacttccag