Sequence
atgc intronic sequence ATGC exonic sequenceTGGTGAATATGGAGCCTTTTTTGCAATTGCAAACAGGATTGACCGTTTACACAAAAATGCTTGGATTGGATTCCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcatatctcatttctttggagatctgcatctttatattctttttcatctgtgagtatattggattttgttttaataaatattaat...
Basic information
species | Glycine max |
transcript | GLYMA16G03340.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 5
TGGTGAATATGGAGCCTTTTTTGCAATTGCAAACAGGATTGACCGTTTACACAAAAATGCTTGGATTGGATTCCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattg----tttttcatatctcatttctttggagatctgcatctttatattctttttcatctgtgagtatattggattt-tgttttaataaatattaat------------------------------------------------------------------------------------
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TGGTGAATTTGGAGCTTTCTTTGCTCTAGCCAACAGGATTGATCGAATTCATAAAAATTCTTGGATAGGATTTCAGTCGTGGAGAGTGACAGCAAGAAAGgtagaagatcaaattttatttgcatttaagcccccttaattttaatcgacgtgtatgattggtaaatcatgaatttacttgatgaatgaatcattggttaaccatgttattcatatgctttgatccttttaagaatgcaaagcagagaggtcttgcataatgattaagccaacaatttatactgaacag
upper sequence: GLYMA16G03340.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 10
TGGTGAATATGGAGCCTTTTTTGCAATTGCAAACAGGATTGACCGTTTACACAAAAATGCTTGGATTGGATTCCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcatatctcatttctttggagatctgcatctttatattctttttcatctgtgagtatattggattttgttttaataaatattaat--
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TGGAGAGTATGGGGCCTTTTTTGCAATAGCTAACAGAGTTGACCGTATACACAGAAATGCTTGGATAGGTTTTCAATCTTGGAGGGCAACAGCAAGGAATgtatgtgatctcttctggt-tctgagttcctttgttaattccatgtataggaatgtttcaatccttcattttagcatctttcaggttggtct-tgtcagcgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13481825|gb|BG511168.1|BG511168EST: GAGAGCAACAGCAAGGAAG GCATCTTTGTCCATAACTGCTGAAAATG-ATTATTAGATGCTATCCAATCC
genomic: GAGAGCAACAGCAAGGAAGgtatatgatt ... gttttaacagGCATCTTTGTCCATAACTGCTGAAAATGCATTATTAGATGCTATCCAATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTGAATATGGAGCCTTTTTTGCAATTGCAAACAGGATTGACCGTTTACACAAAAATGCTTGGATTGGATTCCAGTCTTGGAGAGCAACAGCAAGGAAGgtatatgattgtttttcatatctcatttctttggagatctgcatctttatattctttttcatctgtgagtatattggattttgttttaataaatattaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA