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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTGTTCGTAAGGAAGCTGCAACAATCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAGgtaccaaataacatggtcttcactaaatattgtggctttgaacaggttgtatattttattgtgttcacaaaaaccaatgttctcataattctgcatgcag

Basic information

species Glycine max
transcript GLYMA16G01660.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193642272|gb|FK591992.1|FK591992
EST:     AAGTTATGTCAATTTTAGTTCAG                         AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
genomic: AAGTTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: gi|207812003|gb|GD783588.1|GD783588
EST:     TCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAG                         AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
genomic: TCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: gi|208074389|gb|GD868194.1|GD868194
EST:     CACGGCCGTATTCCCTTCACCAAGTGAAGTTTATGTCAATTTTAGTTCAG                         AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
genomic: CACGGCCGTATTCCCTTCACCAAGTGAAG-TTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: gi|193530513|gb|FK484444.1|FK484444
EST:     TTTTAGTTCAG                         AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
genomic: TTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
EST: gi|193491513|gb|FK453111.1|FK453111
EST:     TCACGGCTGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAG                         AGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA
genomic: TCACGGCCGTATTCCCTTCACCAAGTGAAGTTATGTCAATTTTAGTTCAGgtaccaaata ... ctgcatgcagAGAGTTTTAGAGCAGCGAATCACTGCCCTTTTGGACAAACTGTTAGAGAAA