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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagtgtttttttaattttgacaattaagaataataccaattcaccaactgttatttggttgaaaagtttgcaagcttattatgattcatgc...

Basic information

species Glycine max
transcript GLYMA16G01230.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G17370.2 (Arabidopsis thaliana), 5'ss of exon 10
-ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagtgtttttttaattttgacaattaagaataataccaattcaccaactgttatttggttgaaaagtttgcaagcttattatgattcatgc
 |||||||||| ||  ||||  |||| ||||||||||||||| ||||||| || || ||||| || ||||| |||||||| ||||||||| |  |    | || ||     |  | |     |    ||  |  || || |  |   ||  |||||   |     |  || |  | || ||   
GATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaatagaaaaactgttata-----ggtattctgtgacttaactcaaccatcatccataccttttttgaa---tcaaagatattttcgttatccag--

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 10
---ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagt---gtttttttaattttgacaat-taagaataataccaattcaccaactgttatttggttgaaaagtttgcaagcttattatgattcatgc---------------------------
   ||||||||||||| |  ||    ||  | ||||| || ||| |||||| ||| || ||||||||||| ||||||||||| |||||| |  |        |   |  |  || | | | | | | || || | || || |      ||| |||| |   ||  ||| ||   ||| ||   |||  |                            
AGGATGGTAAAGAGACATTAAATGAGGAAACACCTGAAAATAATTCTCAGTTTACCACTGTTTATGTGGGAAACCTTGCTCCAGAGgtacattatccactaggaagtgctccttgtaatactatcacaacaaaaacagtttatttgaggttctttgat--gaagttttaca---ttagtagatttcgggtacatcgttacagctatctatcttgcag

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 10
---ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagtgtttttttaattttgacaattaagaataataccaattcaccaactgttatttggttgaaaagtttgcaagcttattatgattcatgc
   |||||||||| ||  ||||  |||| ||||||||||||||| ||||||| || || ||||| || ||||| |||||||| ||||||||| |  |    | || ||     |  | |     |    ||  |  || || |  |   ||  |||||   |     |  || |  | || ||   
AGGATGGTAAAGATACTACTAATGGTGAAGCTCCTGAGAACAATGCTCAGTACACAACTGTTTACGTCGGTAATCTTGCTCCAGAGgtaaaatagaaaaactgttata-----ggtattctgtgacttaactcaaccatcatccataccttttttgaa---tcaaagatattttcgttatccag--

upper sequence: GLYMA16G01230.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 10
---ATGGTAAAGAGACCTCTAACAGTGATGCTCCTGAGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagactagtgtttttttaattttgacaattaagaataat-accaattcaccaactgttatttggt---tgaaaagtttgc-aagcttattatgattcatgc---------
   |||||||||||||  | |  | ||| |||||||| ||||| ||||||||||| || ||||||||||| || |||||||| ||||||  | || | |        ||||||  |  || |   || | |    || |    || |  |||||    | |  |  |||  ||  |  || |  |||||           
AAGATGGTAAAGAGACAGCAACTAATGAGGCTCCTGACAACAACCCTCAGTATACAACTGTTTATGTGGGCAATCTTGCTCCAGAGgtaggaaac-aattcgccaaaaattttccctttttactttatttatttgtttat--gctttggtttggcatctcattaacttgtgaaaatcctttttgttcatctgctatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058275|gb|CA801189.1|CA801189
EST:     AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAG                         GCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
genomic: AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagact ... taatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
EST: gi|7233734|gb|AW569078.1|AW569078
EST:     TTGCTCCGGAG                         GCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
genomic: TTGCTCCGGAGgtaaaagact ... taatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
EST: gi|6951590|gb|AW423658.1|AW423658
EST:     AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAG                         GCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG
genomic: AGAACAATCCTCAGTATACTACGGTTTATGTGGGTAACCTTGCTCCGGAGgtaaaagact ... taatccacagGCAACTCAACTTGATCTCCATCACCACTTCCATTCTCTTGGAGCTGGAGTG