Sequence
atgc intronic sequence ATGC exonic sequenceAAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaatgtctccatttttttaaaaattatttacttttctcacctgggataatataaaattatttgacccatgatattatgacactgcag
Basic information
species | Glycine max |
transcript | GLYMA16G00400.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G00400.2 (Glycine max), 5'ss of exon 10
lower sequence: AT1G57870.1 (Arabidopsis thaliana), 5'ss of exon 12
---------AAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttg-----aatgtctcc---atttttttaaaaatt--atttacttttctcacctgggat-aatataaaattatttgacccatgata--------ttatgacactgcag---
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GTATTCCAGAAACGTCTGCCACCTGAAGCAGTAGATCTTCTTTGTAGGTTCTTCCAGTATTCTCCTAATTTGAGATGTACAGCGgtaaattattcatagcttttctctgactttgttacatattctacttccatattttttttgggatcagcatcaga--agctaacccattataagtatgtcttatgattttctgatag
upper sequence: GLYMA16G00400.2 (Glycine max), 5'ss of exon 10
lower sequence: AT1G09840.2 (Arabidopsis thaliana), 5'ss of exon 12
---------AAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaatgtctccatttttttaaaaattatttacttttc-tcacctgggataatataaaattatttgacccatgatattatgacactgcag
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GTGTTCCAAAAACGTTTGCCACCAGAAGCAGTTGATCTTCTTTGTAGGTTCTTCCAATATTCCCCCAATTTGAGATGTACAGCTgtaagttaattcgttccgttccctcca----tattagcatctaatgatctaaattcat-taaaaacactcttctggtgttattgtag--------
upper sequence: GLYMA16G00400.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 10
---------AAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaatgtctc------catttttttaaaaattatttacttttctcacctgggataatataaaattatt--tgacccatgatattatgacactgcag
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GTCTTCCAAAAACGTTTACCTCCAGAAGCTGTGGATTTAGTTTGTAGGTTTTTCCAGTACTCCCCCAATCTGCGATGCACAGCTgtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21256665|gb|BQ453553.1|BQ453553EST: ACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCA TTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACC
genomic: ACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaa ... gacactgcagTTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACGTTTACCCCCAGAAGCAGTGGACCTTGTCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCAgtaagttgaatgtctccatttttttaaaaattatttacttttctcacctgggataatataaaattatttgacccatgatattatgacactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG