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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCTAGCTAGTACAATTATTAATATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaatctgtatataagattttgaacaacatcaatcttatgattttgattcaaaacctactttgtaaattgtattaactgtgtaatttgctctttttacag

Basic information

species Glycine max
transcript GLYMA15G43170.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G43170.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 10
AAGTCTAGCTAGTACAATTATTAATATGGCACAGGATTTTGTGGGTAGCAACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaatctgtatataagattttgaacaacatcaatc-ttatgattttgattcaaaacctactttgtaaattgtattaactgtgtaatttgctctttttacag
 ||||| || || || ||||||   ||||||||||| |||||||| ||||||||||| || ||||||   ||||| || |||||||| |||||| |   |||||    ||   || | |     ||  | |  |||  ||| || | | | | ||||  | | |  | |||      | |||||| |||  |||             
GAGTCTTGCCAGCACCATTATTGGCATGGCACAGGACTTTGTGGGCAGCAACAACATAAACCTTCTTCTACCAAATGGTCAATTTGGAACTCGTCATCAGgtgactcaaacaagt-tctgcttcttctacccccatgcatcattttaactgttattcttaccatgttatgt------ttttaactttgt--tttag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193475387|gb|FK441132.1|FK441132
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|207816684|gb|GD787077.1|GD787077
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACAC
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACAC
EST: gi|208292959|gb|GE089839.1|GE089839
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|208093390|gb|GD893577.1|GD893577
EST:     ACAACATCAATCTCCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAA
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAA
EST: gi|208322288|gb|GE124765.1|GE124765
EST:     GGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: GGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|207768691|gb|GD740502.1|GD740502
EST:     AATTTGGTACTCGTAACTTG                         GGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
genomic: AATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTACACTGAACTGAACACT
EST: gi|207765587|gb|GD736392.1|GD736392
EST:     ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTG                         GGAGGGAAGGNTCATGCTAGTGCTAGATACATCTAACACTGAACTGAACNC
genomic: ACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGTAACTTGgtgagatgaa ... ctttttacagGGAGGGAAGGATCATGCTAGTGCTAGATACATCTA-CACTGAACTGAACAC