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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAGgtaaaattctaaacagtgtttgtgttatttgcaaccgtatatgttactctagctggtttactgcttggatttag

Basic information

species Glycine max
transcript GLYMA15G42300.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410306|gb|EV280121.1|EV280121
EST:     TGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGGATAGCTAAGGCAAG                         GTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC
genomic: TGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGG-ATAGCTAAGGCAAGgtaaaattct ... ttggatttagGTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC
EST: gi|151408594|gb|EV278402.1|EV278402
EST:     GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG                         GTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC
genomic: GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAGgtaaaattct ... ttggatttagGTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC
EST: gi|208209735|gb|GE007702.1|GE007702
EST:     GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG                         GTATTGGGAGCCAACTTATGAGGATGCAATGAATCTAATTGCTCGTTTGCC
genomic: GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAGgtaaaattct ... ttggatttagGTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC
EST: gi|254317135|gb|GR826080.1|GR826080
EST:     GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAG                         GTATTGGGAGCCA-CTTATGAGGATACA-TGAATCTAA
genomic: GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAGCTAAGGCAAGgtaaaattct ... ttggatttagGTATTGGGAGCCAACTTATGAGGATACAATGAATCTAA
EST: gi|192324396|gb|FK015747.1|FK015747
EST:     TGCAGAGTGAGTTTCAGAAGGTATATGAGGGGTGGGATAGCTAAGGCAAG                         GTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC
genomic: TGCAGAGTGAGTTTCAGAAGGCATATGAGGG-TGGGATAGCTAAGGCAAGgtaaaattct ... ttggatttagGTATTGGGAGCCAACTTATGAGGATACAATGAATCTAATTGCTCGTTTGCC