1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAGGAATAGCTAACTTTACTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctatcatcatgaagctttgctctataatatcatattaatttgcttagagtagagttaattgattgttgacctattacaaaccag
species | Glycine max |
transcript | GLYMA15G42140.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGTEST: gi|7924163|gb|AW830189.1|AW830189
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGTEST: gi|6502280|gb|AW203653.1|AW203653
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGTEST: gi|6726078|gb|AW310477.1|AW310477
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAANAGCTAAAAGAAGCANAGATGCACATCTATGTGAGGAGAGGAGGTEST: gi|58022555|gb|CX709296.1|CX709296
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGTEST: gi|192330363|gb|FK021164.1|FK021164
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGTEST: gi|10253168|gb|BE820934.1|BE820934
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
EST: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAG GAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
genomic: CTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctat ... tacaaaccagGAACAAAAGCTAAAAGAAGCAAAGATGCACATCTATGTGAGGAGAGGAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGCCAAAAGCGAGCCCTTGTGGTAGGTGGAGGAATAGCTAACTTTACTGATGTTGCTGCTACATTCAGCGGCATAATTCGTGCTCTGAAGGAGAAGgtgagcctatcatcatgaagctttgctctataatatcatattaatttgcttagagtagagttaattgattgttgacctattacaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA