1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
GTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAgtatgcttagatattgttgtgaatttcttcaaatacaggatctatacatcttgatcttatatatatatatgccttttgaacttccag
species | Glycine max |
transcript | GLYMA15G41690.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAA GTATCTCTTGAACTCGGCGGCAATGCEST: gi|151400125|gb|EV269939.1|EV269939
genomic: CGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAgtatgcttag ... gaacttccagGTATCTCTTGAACTCGGCGGCAATGC
EST: CGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAA GTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCTEST: gi|151404401|gb|EV274211.1|EV274211
genomic: CGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAgtatgcttag ... gaacttccagGTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCT
EST: CGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAA GTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCT
genomic: CGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAgtatgcttag ... gaacttccagGTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGGAAGATCACATTCACAGGCTCGACGGCTGTTGGGAAGAAATTGATGGCTGGTTCAGCTGAAACAGTTAAAAAAgtatgcttagatattgttgtgaatttcttcaaatacaggatctatacatcttgatcttatatatatatatgccttttgaacttccag
- - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA