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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGgtaaataatttgctctactaggagttgtttattttgcatatgttgcttattgctccctgactttttcaaacttgtgaagctgattatttttttcttctaataaccgcag

Basic information

species Glycine max
transcript GLYMA15G23420.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G23420.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g02670.t01 (Vitis vinifera), 5'ss of exon 10
ATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGgtaaataatttgctctactaggagttgtttattttgcatatgttgcttattgctccctgactttttcaaacttg-tgaagctgattatttttttcttctaataaccgcag
 |||||||| || |||||  ||||||| ||||||||| |||||||||||||||||||||| || ||  |||| |||||||||||||||| |       || | || |||      ||||   | | |||         |    || || ||  |  |   || | |||||   |  || |   |  |  | ||||
GTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAGgtaatt------ttcaattatgagc-----atttgagagaagtt---------tttgcgatttctttgagttaaatgcaactgat-gctcattcccattcgtggctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208177087|gb|GD979924.1|GD979924
EST:     AAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAG                         AATAAATGCAATGTGGGCTATGCATTTATCAACA
genomic: AAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGgtaaataatt ... ataaccgcagAATAAATGCAATGTGGGCTATGCATTTATCAACA
EST: gi|4313318|gb|AI460437.1|AI460437
EST:     AAAATCACAGGGGTACTTATGATTNTCTCTACTTGCCAATTGACTTTAAG                         AATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCTCCCTCTCTT
genomic: AAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAGgtaaataatt ... ataaccgcagAATAAATGCAATGTGGGCTATGCATTTATCAACATGCTGTCTCCCTCTCTT