1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTGGGCCCTTGCATACTCCTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttcatttcactattttctagttatgttaaatatttaggggatgtaaccttccatttcatatctgtaattttgctcagtaagatatgcaggcttttgctcatacatatacaatggattggatgcttgtattctgtgtagagataatttacttgatactctgattatcag
species | Glycine max |
transcript | GLYMA15G19670.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|20448705|gb|BQ252829.1|BQ252829
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|254334456|gb|GR844241.1|GR844241
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG G-AGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|193615341|gb|FK564765.1|FK564765
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|193472436|gb|FK438643.1|FK438643
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|192309267|gb|FG999144.1|FG999144
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|208314647|gb|GE112191.1|GE112191
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: TACTTCAGTGGAAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|193335148|gb|FK297944.1|FK297944
genomic: TACTTCAGTGG-AAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: TGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTEST: gi|15813675|gb|BI785950.1|BI785950
genomic: TGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|207753779|gb|GD722341.1|GD722341
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTTEST: gi|193487181|gb|FK450902.1|FK450902
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
EST: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAG GGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
genomic: CTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttca ... tgattatcagGGAGGGAAGATCCTAACAGGTGGATCTGTATTAGAGTCAGCAGGAAATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGGAATCCCTTGGAGAAGGGGACTCTAGTTGGGCCCTTGCATACTCCTACTTCAGTGGAAAACTTTCAGAAGGGTATTTCAGTCATAAAATCTCAGgtatgtttcatttcactattttctagttatgttaaatatttaggggatgtaaccttccatttcatatctgtaattttgctcagtaagatatgcaggcttttgctcatacatatacaatggattggatgcttgtattctgtgtagagataatttacttgatactctgattatcag
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