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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagattctactgttgtctatatcatttttttttcttcttgatattcagttgtgccatatattgcagtctatatacatgcatttgtcctccaacat...

Basic information

species Glycine max
transcript GLYMA15G15960.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15960.2 (Glycine max), 5'ss of exon 10
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 5'ss of exon 10
GTTTGGGATATACGAAGTAAAATGCAGATTCATGCTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtg--cagattctactgttgtctatatcatttttttttcttcttgat-attcagttgtgccatatattgcagtctatatacatgcatttgtcctccaacat
|| ||||| ||  |||  ||    ||| |   |||  | ||||||||||| ||||| |||||||||||| |||||| | | || ||  |     |||      ||   | | |    |       | || |    ||    | || | | |||||   ||    |       | |    ||||    
GTATGGGACATTAGAACCAAGGCCCAGGTGTTTGCATTATCAGGACATGAGAACACGGTCTGCTCTGTGATTACGCAGGCAACTgtaaggcttaattacgacctttcttgttttgcatggacgaatcctaggccgtttctctctgtc-tctattgttatcagagttagcagttcttcggtccagg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993683|gb|BQ785211.1|BQ785211
EST:     CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG                         GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: gi|37994708|gb|CF806333.1|CF806333
EST:     CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG                         GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: gi|193320226|gb|FK284375.1|FK284375
EST:     CTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACG                         GATCCCCAAGTTGTTACAGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: gi|193457505|gb|FK422333.1|FK422333
EST:     CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG                         GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: gi|10254053|gb|BE821819.1|BE821819
EST:     CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACG                         GATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC
EST: gi|193520683|gb|FK482048.1|FK482048
EST:     CTCTTTCAGGTCATGATAACACTGTCTGTTCTGTGTTTACGCGGCCAACG                         GATCCCCAAGTTGTTACAGGTTCTCATGACACTACCATCAAGATGTGGGAC
genomic: CTCTTTCAGGACATGATAACACTGTCTGCTCTGTGTTTACGCGGCCGACGgtgtgcagat ... ttgtttacagGATCCCCAAGTTGTTACGGGTTCTCATGACACTACCATCAAGATGTGGGAC