Sequence
atgc intronic sequence ATGC exonic sequenceAACATATAAGACAGATAGCACTAGAATCAAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGgtaaggcaggcattaatgtccttggtagttctaacatatgctttgtgcattttagttattgacttggcacattttaaacttgatgtgattaagtagcagtttgttcattaatcattcttattcttgctaaaattcaagcttgtccattatcactgcatcgtaattgctaagtttttattgaaattgcattccttag
Basic information
species | Glycine max |
transcript | GLYMA15G13640.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 5'ss of exon 10
AACATATAAGACAGATAGCACTAGAATCAAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGgtaaggcaggcattaatgtccttggtagttctaacatatgctttgtgcattttagttattgacttggcacattttaaacttgatgtgattaagtagcagtttgttcattaatcattcttattcttgctaaaattcaagcttgtccattatcactgcatcgtaattgctaagtttttattgaaattgcattccttag
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GACATGTGCGCCAAATTGCTCAAGAGACTAGTGGAGAAGTCCAGTATAGTGGTGGACGCCAGCCTGCAGTTTTAAGGACTTTCAGCCAGAGACTCTGCCGgtaataca--------tttccttgataagcttagt-tttattttctaaagcattgttct--aattgcttttcttgaaattcag-----------------------------------------------------------------------------------------------------------------
upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G34710.1 (Arabidopsis thaliana), 5'ss of exon 9
AACATATAAGACAGATAGCACTAGAATCAAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGgtaaggcaggcattaatgtccttggtagttctaacatatgctttgtgcattttagttattgacttggcacattttaaacttgatgtgattaagtagcagtttgttcattaatcattcttattcttgctaaaattcaagcttgtccattatcactgcatcgtaattgctaagtttttattgaaattgcattccttag
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GACATGTAAGACAAATTGCACAAGAAACAAGTGGAGAAGTTCAGTATGGTGGAGGGCGCCAACCTGCGGTTTTAAGAACCTTCAGTCAAAGACTCTGTCGgtaagta----tctactttacttaatagctttatcac------caagaatttcttttattcttattctaattgttcaatatg----gatgaactttcag-------------------------------------------------------------------------------------------------
upper sequence: GLYMA15G13640.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 5'ss of exon 10
AACATATAAGACAGATAGCACTAGAATCAAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGgtaaggcaggcattaatgtccttggtagttctaacatatgctttgtgcattttagttattgacttggcacattttaaacttgatgtgattaagtagcagtttgttcattaatcattcttattcttgctaaaattcaagcttgtccattatcactgcatcgtaattgctaagtttttattgaaattgcattccttag
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GGCACATACGACAAATTGCACAAGAAACCAGTGGAGAAATTCAGTATGGTGGGGGCCGCCAACCTGCTGTTTTAAGGACGTTTAGCCAGAGATTGTGCAGgtaatgc---catcaagcacatttgtt-ttaaaatatctgctcagtgc----ttgcatctgatccagcaattattacagtggattagtcactgcatcaaac--ctgactg--------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15337439|gb|BI498095.1|BI498095EST: GGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAG GGGCTTTAATGATGCTGTGAATGGGTTTGTTGATGATGGCTGGTCACTGAT
genomic: GGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGgtaaggcagg ... cattccttagGGGCTTTAATGATGCTGTGAATGGGTTTGTTGATGATGGCTGGTCACTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACATATAAGACAGATAGCACTAGAATCAAGTGGAGAAATTCAGTATGGTGGTGGACGCCAGCCTGCTGTTTTAAGAACATTTAGCCAGAGACTTTGCAGgtaaggcaggcattaatgtccttggtagttctaacatatgctttgtgcattttagttattgacttggcacattttaaacttgatgtgattaagtagcagtttgttcattaatcattcttattcttgctaaaattcaagcttgtccattatcactgcatcgtaattgctaagtttttattgaaattgcattccttag
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC