1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTGCTGCCAACCAACATAAGCCAGCTGATATCGTCAGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatgtcatctctggatagtttagttgctttttatggtatcaattatcagtttctcattcatgatcacatgtgtgttgtgattgtgcag
species | Glycine max |
transcript | GLYMA15G12220.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|31463880|gb|CD405908.1|CD405908
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|21994680|gb|BQ786208.1|BQ786208
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|22932404|gb|BU549543.1|BU549543
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|23734444|gb|BU765448.1|BU765448
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|31474015|gb|CD416043.1|CD416043
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|13312864|gb|BG406515.1|BG406515
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|22928039|gb|BU545178.1|BU545178
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|13479119|gb|BG508462.1|BG508462
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|9901558|gb|BE610526.1|BE610526
genomic: GCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|193352433|gb|FK316829.1|FK316829
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATEST: gi|254318122|gb|GR832290.1|GR832290
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGAT
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|6724491|gb|AW308890.1|AW308890
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACCAAGCTCAAGTGATGAGGGAAATTGAAGEST: gi|33389396|gb|CA852603.1|CA852603
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
EST: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAG AGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
genomic: GAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatg ... gattgtgcagAGGATGAACAATTTGAAGCCGACAAAGCTCAAGTGATGAGGGAAATTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTGCCAACCAACATAAGCCAGCTGATATCGTCAGTATATTTGTTGCGAACAAAAGTAAGATGCTGAGACTATTGGAAGACTTCAAAATTGATAAAGgtaagtgatgtcatctctggatagtttagttgctttttatggtatcaattatcagtttctcattcatgatcacatgtgtgttgtgattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA