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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcag

Basic information

species Glycine max
transcript GLYMA15G10030.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g57290.1 (Oryza sativa), 5'ss of exon 10
AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaac----cgtgttttccc--tttctcattattgataattt-ttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcag
||||||| ||||||||||| ||||| |||||||| ||||| || || |||||||| || ||||| || ||||||||||||||||| ||  | ||||| |||||        |||  || ||  |||  |||   || |  |||  |  |||  || || | ||| ||    |  |   |  |  || |          ||
AATTATCCAAAGAAATAAATGAGTCTTTCAAGCAATCATCTCAAGCAAGGACAAAGCTTCCATCTGGCATTGAAATGAGTGTTCACGTGCTTACAACAGGgtaggtaacatgtgccttgccatttttacatgtgtgctggtttactgagtagcatgttctgtttacacaacacttgtctaaacctaatactgatagatag

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G704093_T01 (Zea mays), 5'ss of exon 9
AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcag-----------------------------------------------------------------------------------
||||||| |||||||||||||| || |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||||||||||||  | ||||| |||||||   | ||  | | ||    | ||  ||| | | |    |  | || |||     ||  |   |  | |   | ||   |||  ||                                                                                      
AATTATCCAAAGAAATAAACGATTCATTCAGGCAATCATCTCAAGCTAGGACAAAGCTTCCCTCAGGCATTGAAATGAGTGTTCATGTGCTTACAACAGGgtaaatatttttgcctcattgctttgatacatactctctgcaga--acttgttccggttagatagctttgtagacctgatctcatgcatgtgctccgtagtcctagcatggcaggctggccttttgatgttgttggtcatatttatgtagttatgataaaatatgttgatttacag

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 10
lower sequence: AC155496.2_FGT009 (Zea mays), 5'ss of exon 10
AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcag-----------------------------------------------------------------------------
||||||| ||||||||||| || || ||||  || ||||| || ||||||||||| || || || || |||||||||||||| |||||  | ||||| |||||||   | ||| ||| ||       |||||| | | | ||||  |  | ||| ||  ||  |   |        | |    |||  | ||                                                                              
AATTATCCAAAGAAATAAATGATTCATTCAGACAATCATCTCAAGCTAGGACAAAGCTTCCCTCTGGCATTGAAATGAGTGTCCATGTGCTTACAACAGGgtaaataatttttgcccattgct----ttgatactctctctgtagaacatgttccttttagatagctttggaaacctgacctcatgcatccatagtcctagcatgcgagctggacttttgatgttgttggttgtgtttatgtagttctgataaaatatgttgatttacag

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 5'ss of exon 10
AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaa---------accgtgttttccctttctcattattga----taatttttatgt---actattttttctttccagtgaatctaa-ttgcaatt--attggatgag-tgcag
||||||| ||||| ||||| ||||||||||| || ||||| || || ||||||||||| ||| |||| ||||| ||||||||||||||||| ||||||||||||         |   |||||||  || | | | |   |     | |  | || |   |  | || ||  |||||  |||| ||| ||   |||  | ||| || | | |||
AATTATCTAAAGAGATAAATGAGTCCTTCAAACAATCATCGCAAGCCAGGACAAAACTTCCAACAGGAATTGAGATGAGTGTTCATGTCTTAACAACTGGgtaattctatcttattttgttttctattacacttcaagaaaacacagtcctaatatttaatcacttatttcttccaaggaatttaacttattatttgagtggctgggctacag

upper sequence: GLYMA15G10030.2 (Glycine max), 5'ss of exon 10
lower sequence: EFJ14633 (Selaginella moellendorffii), 5'ss of exon 10
AATTATCAAAAGAAATAAACGAGTCCTTCAAGCAGTCATCCCAGGCTAGGACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgta-aaccgtgttttccctttctcattattgataatttttatgtactattttttctttccagtgaatctaattgcaattattggatgagtgcag
|| | ||||  ||||||||||||||||| ||||| || || || || |||||||| || ||| | || ||||| |||| ||| ||||| ||||| ||||||||  | |   |       || |   ||||        ||   | |                                                
AACTTTCAAGGGAAATAAACGAGTCCTTTAAGCAATCCTCACAAGCCAGGACAAAGCTACCAGCTGGAATTGAGATGAATGTGCATGTGTTGACCACTGGgtatgagcagatcacttggtttttgctatttgacgcccttgcatgcacgcag------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151404598|gb|EV274412.1|EV274412
EST:     ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGG                         GTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
genomic: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
EST: gi|193438644|gb|FK401879.1|FK401879
EST:     GGGATTGAAATGAGTGTTCATGTCTTGACAACTGG                         GTACTTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGA
genomic: GGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTAC-TGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGA
EST: gi|7028742|gb|AW458525.1|AW458525
EST:     ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGG                         GTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
genomic: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
EST: gi|151395410|gb|EV265287.1|EV265287
EST:     ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGG                         GTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA
genomic: ACAAAACTCCCATCAGGGATTGAAATGAGTGTTCATGTCTTGACAACTGGgtaaaccgtg ... atgagtgcagGTACTGGCCGACATATCCACCCATGGATGTTAGACTTCCTCATGAATTGAA