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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACCTTTGCTACCGGATGATGGTCCTGGAACAGATATGGTTGTTTCATATCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCGgtaagggcacaagcttcttccccccttccttaattctacttactatagtttcacgtagtttatgtgcttgtgcaaatataataatttcatcctttaacgataaacag

Basic information

species Glycine max
transcript GLYMA15G06880.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193434229|gb|FK399275.1|FK399275
EST:     TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193450610|gb|FK412114.1|FK412114
EST:     GGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193561636|gb|FK520645.1|FK520645
EST:     GTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193450138|gb|FK413854.1|FK413854
EST:     GGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|208087793|gb|GD889031.1|GD889031
EST:     GGCCGGGGTATTGAATTTTACTTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCT
genomic: GGCCGGGGTATTGAA--TTAC-TACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCT
EST: gi|193668018|gb|FK610606.1|FK610606
EST:     GGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193614044|gb|FK562744.1|FK562744
EST:     TTGGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: TTGGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193406084|gb|FK370941.1|FK370941
EST:     TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193425839|gb|FK385730.1|FK385730
EST:     TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|208330896|gb|GE131791.1|GE131791
EST:     GTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|208237541|gb|GE028843.1|GE028843
EST:     GTATTGAATTACTACAGAGCG                         GGCAGAGGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|193658050|gb|FK602539.1|FK602539
EST:     TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: TCCCACGTCAACCGAAGCTCTTGGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|208169003|gb|GD966180.1|GD966180
EST:     GGCCGGGGTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GGCCGGGGTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
EST: gi|208331077|gb|GE128136.1|GE128136
EST:     GTATTGAATTACTACAGAGCG                         GGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC
genomic: GTATTGAATTACTACAGAGCGgtaagggcac ... cgataaacagGGCAGAAGTACCCTTTTACATTTGACAAGGTATTTAATCACGAGGCTTCTC