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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGGATCCGTGTGAAGACCTGACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCGTTGTTTGTTCCAGAAgtaggtctttttacattttttttaaaagaaaaagaagagatagaaattatatttaggagtttctttagttgatttttgtaaatgttttgctatatactttgtgaatccaaattcacataaaaaaaaataccctagaacatgtttatccatttattttcatgtaatcag

Basic information

species Glycine max
transcript GLYMA15G06380.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
GAGGTGGATCCGTGTGAAGACCTGACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCGTTGTTTGTTCCAGAAgtaggtctttttacattttttttaaaagaaaaagaagagatagaaattatatttaggagtttctttagttgatttttgtaaatgttttgctatatactttgtgaatccaaattcacataaaaaaaaataccctagaacatgtttatccatttattttcatgtaatcag
||||| ||||| ||||||||| | || | |||||| || || ||||| ||||| ||||| ||||| |||| ||| || || ||||||||||| |||||| | | || ||   |              |||     |  |  || |||      ||  |||  || | |||  | ||  ||      ||  |   ||| |     || || |  | |  ||  |     |  || | | | | || ||| |||| |    ||
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccct--------------aagcatgtgggagcattttt------ttgcttatctgttctttccacatactt------attttgcttgagttt---tttacttttacagcaactctgattagtatctct-tgctttcattctcatctgcatag

upper sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
GAGGTGGATCCGTGTGAAGACCTGACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCGTTGTTTGTTCCAGAAgtaggtctttttacattttttttaaaagaaaaagaagagatagaaattatatttaggagtttctttagttgatttttgtaaatgttttgc---tatatactttgtgaatccaaattcacataaaaaaaaataccctagaacatgttta-tccatttattttcatgtaatcag
||||||||||| ||||| ||  |||||||||||||||| || ||||| || |||||||| || || || | ||| || || ||||| ||||||||| ||||| |     | || ||           |       ||   || |||| | | ||  ||    | |  ||   || ||||||||   ||| ||   || || |     ||    |||       || | ||  | ||  ||| | |          || |  ||||
GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttcttcctaagttctctgag--taaattttgaatttatttc---taaacttca-aattgttttgccattatttagcatgcgattttccttttttgtaatct---ctatcttaacatataattagtgctaaccccaaaatatcttcag