1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCTGCTATGACTGGAGTAAAGGGGCAGAAAATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtttggctatccacctctaaaaagaatatcctttaatcatctgttaatgatatgcaaaattatattccctatgaaatgcag
species | Glycine max |
transcript | GLYMA15G05740.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAGEST: gi|16106332|gb|BI894072.1|BI894072
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAG
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGEST: gi|21887065|gb|BQ740278.1|BQ740278
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAG
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGANGTTAAGGGCAAACCACGCEST: gi|254327975|gb|GR834940.1|GR834940
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGC
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAGEST: gi|254327974|gb|GR834939.1|GR834939
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAG
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG -AATCTGAGGTTAAAGGGCAAACCACGCATTGGTGCTACTGGCAGAA-GTAEST: gi|21887213|gb|BQ740426.1|BQ740426
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAA-GGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTA
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGAGGTTAAGGGCAAACCACGCATTEST: gi|8670281|gb|BE191388.1|BE191388
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGCATT
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAGEST: gi|15200978|gb|BI424629.1|BI424629
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAG
EST: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAG GAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAG
genomic: ATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtt ... tgaaatgcagGAATCTGAGGTTAAGGGCAAACCACGCATTGGTGCTACTGGCAGAAAGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTGCTATGACTGGAGTAAAGGGGCAGAAAATTCTAATCCTGCAGCAGCAAAAACCTATATTTTCCTGCATTTGCCTCAGgtatttggtttggctatccacctctaaaaagaatatcctttaatcatctgttaatgatatgcaaaattatattccctatgaaatgcag
- - - - - - - - - - - - - - - - - - - - CTGCAG