1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACTAAAGCAGAACCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaacttagacttttgatttcttttggtcttcatcttatagagcaccattttgatcacaatggacagccatcctggattgacccgttaaatctcc...
species | Glycine max |
transcript | GLYMA15G05410.5 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|207688423|gb|GD672650.1|GD672650
genomic: GGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: TTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|31307074|gb|CD392277.1|CD392277
genomic: TTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|254336540|gb|GR842719.1|GR842719
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|207822316|gb|GD796113.1|GD796113
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|208255404|gb|GE052161.1|GE052161
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: GGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|207820072|gb|GD789978.1|GD789978
genomic: GGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: CCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGGGTATCAGEST: gi|254336541|gb|GR842720.1|GR842720
genomic: CCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAGEST: gi|207718616|gb|GD700510.1|GD700510
genomic: ACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
EST: GGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAG GCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
genomic: GGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaac ... cactttgcagGCTTTTCTAGAATGGAAGAATGCAAGAAGAGAGGAAGTGTCCGAGTATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTAAAGCAGAACCTCCAATCTACTATTTGCCTAACAAGCCCTTGGATGAAGATCCTACATTACTTGAGAAGAGCAAAGAAGAGgttgtcaaacttagacttttgatttcttttggtcttcatcttatagagcaccattttgatcacaatggacagccatcctggattgacccgttaaatctcc
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG