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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGAAATATAAGTATTAGAACTGGTGTGTTGGATGAAAAGGCAGCTGCAACCCAGGCCCTTGGCCTGTTTGCACAGCACACAAAGACTTTTTATGCACCgtatcctttaactgaatttttttttttttaatagtctggttctggttactcctttaacaacaaaaacaacaaaataacactattagttatgtttgaattctttaatcattttaag

Basic information

species Glycine max
transcript GLYMA15G05090.1
intron # 10
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 10
lower sequence: AT4G27640.1 (Arabidopsis thaliana), 5'ss of exon 10
TTCGAAATATAAGTATTAGAACTGGTGTGTTGGATGAAAAGGCAGCTGCAACCCAGGCCCTTGGCCTGTTTGCACAGCACACAAAGACTTTTTATGCACCgtatcctttaactgaatttttttttttttaatagtctggttctggttactcctttaacaacaaaaacaacaaaataacactattagttatgtttgaattctttaatcattttaag
|| | || || ||  ||||||| || || || |||||||||||||||||||| || || ||||||||||||||||  ||||| ||  ||  || |||||||||||||| ||||         |   |||||  ||    |  |  ||   | ||| |||  | ||||      ||  | |  | | | |  | | |                   
TTAGGAACATTAGCGTTAGAACAGGAGTTTTAGATGAAAAGGCAGCTGCAACTCAAGCTCTTGGCCTGTTTGCACTCCACACTAAATCTGCTTTTGCACCgtatccttcaact---------tccctttaacggttgtttcttctttggactttttaca--agaaacctttttatgcctccttaactaacttataag------------------

upper sequence: GLYMA15G05090.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 5'ss of exon 10
TTCGAAATATAAGTATTAGAACTGGTGTGTTGGATGAAAAGGCAGCTGCAACCCAGGCCCTTGGCCTGTTTGCACAGCACACAAAGACTTTTTATGCACCgtatcctttaactgaatttttttttttttaatagtctggttctggttactcctttaacaacaaaaacaacaaaataacactattagttatgtttgaattctttaatcat-tttaag
|||||||||| ||||| ||||| || |||||||||||||||||||||||||| || ||||||||| | |||||||  || || |||  || |||||||||||||||| |   |||      | |||  ||||| | |  ||||      || | |  ||||| |   |  ||| | |   | |||      |||| ||||||||||  | ||||||
TTCGAAATATCAGTATAAGAACAGGAGTGTTGGATGAAAAGGCAGCTGCAACTCAAGCCCTTGGCTTATTTGCACTTCATACCAAGGGTTCTTATGCACCgtatcctct---tga------tctttcctaatattat--ttct-----ttcttgtgtcaacatagtga--aaatttatgttgtta------tttggattctttaattttgtttaag