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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg...

Basic information

species Glycine max
transcript GLYMA15G04500.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 5'ss of exon 8
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaat---tactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
| || || ||||| || || || ||||| ||||||||  | ||||| |||||||||||||||||||| || |||||||||||||| ||  | |||||||     ||  |||  | ||    ||   | || | | |  |   |||  | ||| |  |  |||| ||| ||| | | |  |                 
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTGTTAGTAACTTCATTGCTCAGGCCGTACGgtaatgctcgctgaacttctttcaacattctct-caggttgtg-tccagttggtcctggagcttattttcatacataattttacag-----------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g16980.5 (Oryza sativa), 5'ss of exon 9
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaat---tactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
| || || ||||| || || || ||||| ||||||||  | ||||| |||||||||||||||||||| || |||||||||||||| ||  | |||||||     ||  |||  | ||    ||   | || | | |  |   |||  | ||| |  |  |||| |||                              
AGATCCGAATTGCCAGGATTTTCAACACCTATGGACCTAGGATGAACATTGATGATGGGCGTGTTgttagtaacttcattgctcaggccgtacggtaatgctcgctgaacttctttcaacattctct-caggttgtg-tccagttggtcctggagcttattttcata------------------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G044027_T02 (Zea mays), 5'ss of exon 9
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| || ||||| || || || ||||| ||||||||| | ||||| ||||| ||||| |||||||| ||||||||||||||||| ||  |||||||||   | |    || | | ||||     ||   | |      | || || ||  || ||  | | |  ||  |||  | |                 
AAATCCGAATTGCCAGGATTTTCAACACCTATGGACCAAGGATGAACATTGACGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaatgcttgttgaattctttagtttcttcccagcttctgcca--gatagttttg-gtggctaatattttcatgatcttgtag-----------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G177373_T02 (Zea mays), 5'ss of exon 9
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgcta--taatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| || ||||| || || |||||||| ||||| ||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||  ||||  ||  || |  ||||  | |     |  || ||  | ||  |  ||   |  | |||  | |   | |                      
AAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat-gctttgttga-atgtattttattttctcttgagctactgcagatatattggcggctaatcttttcacaatctttag--------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G157772_T02 (Zea mays), 5'ss of exon 5
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgcta--taatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| || ||||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||  ||||  ||  || |  ||||  | |     |  || ||  | ||  |  ||   |  | |||  | |   | |                      
AAATCCGAATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGTCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat-gctttgttga-atgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag--------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G165357_T02 (Zea mays), 5'ss of exon 8
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgcta--taatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| || ||||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||  ||||  ||  || |  ||||  | |     |  || ||  | ||  |  ||   |  | |||  | |   | |                      
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat-gctttgttga-atgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttag--------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G300412_T01 (Zea mays), 5'ss of exon 15
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgcta--taatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| || ||||| || || || ||||| ||||| ||  | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||  ||||  ||  || |  ||||  | |     |  || ||  | ||  |  ||   |  | |||  | |   | |                      
AAATCCGGATTGCCAGGATTTTCAACACCTATGGGCCTAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat-gctttgttga-atgtcttttattttctcctcagctactgcagatatattggcggctaatcttttcacaatctttag--------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G382038_T01 (Zea mays), 5'ss of exon 10
AAATACGCATTGCAAGAATCTTTAACACATATGGACC-ACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgcta--taatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| || ||||| || || |||||||| ||||| || | | ||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||  ||||  ||  || |  ||||  | |     |  || ||  | ||  |  ||   |  | |||  | |   | |                      
AAATCCGGATTGCCAGGATTTTTAACACCTATGGGCCTAAGGATGAACATTGATGATGGCCGTGTTGTTAGCAACTTCATTGCTCAGGCTGTGCGgtaat-gctttgttga-atgtattttattttctcttgagctactgcagatatattggcggctaatcttttcacaatctttag--------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 5'ss of exon 8
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| |||||||| |||||||| ||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |||||||| |||| |     ||      |||       ||   ||  |||    ||   |  | |  ||  ||  | | |   |||| |  | ||  ||  |         
AAATCCGCATTGCTAGAATCTTCAACACTTATGGTCCACGCATGAACATCGATGATGGCCGTGTTGTAAGCAACTTCATTGCACAAGCACTCCGgtgagcctctttgctcaatccaac--gaacaaattttat---tttccgagctataaattactcatctcttgttattgttcttgtcatgaatacttag---

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G28760.3 (Arabidopsis thaliana), 5'ss of exon 7
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtt--taaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgat---ggttttgg--ttgtcagaagg-----------------------------------
| |||||||| || || || || ||||||||||| || || ||||| ||||||||||| || ||||| ||||||||||||||||| || ||  ||| |  |  | |     |||  |||  | |||  ||  | |  | || ||  ||           |     |   ||| |||      |  | |  |  |   || |                                   
AGATACGCATAGCGAGGATATTCAACACATATGGTCCTCGTATGAACATTGATGATGGTCGCGTTGTGAGCAACTTCATTGCTCAGGCTCTCAGgtga--aactaatctccatcaagttcttgaatttatcttttttttttttttttttcttgaaaaaatagccgagtaattttgagtcgaatcctagactaattctaaagcctttttgtttgataaaattgttttgggtttgcag

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 5'ss of exon 8
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattacttta---ctgttatctggtttaaatgcatgctataat--gttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| |||||||| |||||||| ||||||||||| || || ||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||   | |||   || | | ||   || ||  || | | |  |   |   | |||     ||| |   ||| || | || |                      
AAATCCGCATTGCTAGAATCTTCAACACATATGGTCCTCGAATGAACATCGATGATGGGCGTGTTGTGAGCAACTTCATTGCTCAAGCACTCCGgtaaagtcattagctctctcaacttcattgaaaccaagttttgtttcatctctgcttagctgtgtttccattaaatgtgttgtag--------------------

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 9
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
||||||||||||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||  | |||   |  |   | | |      |||  |   | | |  || ||     |     |  | | | || | |    | |    |   | |||  
AAATACGCATTGCTAGAATTTTCAACACATATGGGCCCCGCATGAATATTGATGATGGACGTGTTGTCAGCAATTTCATAGCTCAAGCACTTCGgtatgtccttatgtagtccttagctgttgatcatatttgtaagctactattttcatttaatcatgctttgtttaatttccaagatgacatccactgaact

upper sequence: GLYMA15G04500.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S189_118V6.1 (Physcomitrella patens), 5'ss of exon 9
AAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactttactgttatctggtttaaatgcatgctataatgttgttacttctgcatgtcttttttatatatattctgatggttttggttgtcagaagg
|||| ||  | ||| |||| |||||||| ||||| || ||||||||||| || |||||||| || |||||||| || |||||||||||| |  |||| |     |   | | ||    || |||   | || |||  |  | |  ||  ||  | |    |    || | | | ||  | | |           
AAATCCGTGTAGCACGAATTTTTAACACCTATGGGCCTCGCATGAATATCGACGATGGGCGAGTAGTCAGCAATTTTATTGCTCAAGCATTAAGgtactggtcctcaaggtctcaaaattcaatatttcct-taacttaatgaactcaacacatttgacatg---atgtacgggtg--tgtag-----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231271|gb|BE800168.1|BE800168
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTG
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTG
EST: gi|151412093|gb|EV281905.1|EV281905
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGG
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGG
EST: gi|192316740|gb|FK006443.1|FK006443
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGG-A-CCATTGACAGTCCA
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCA
EST: gi|192316741|gb|FK006444.1|FK006444
EST:     AATAT-GATGATGGGCGTGTTGTCAGCA-CTTCATTGCTCAAGCACTGCG                         GGGG-AAC-ATTGACAGTCCA
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCA
EST: gi|19453064|gb|BM954474.1|BM954474
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCCGAAGTTT
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTC-GAAGTTT
EST: gi|192296657|gb|FG991225.1|FG991225
EST:     AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCG                         GGGGGAACCATTGACAGTCCAATGTCCGG-A-CACAAACTCGAAGTTTCTG
genomic: AATATTGATGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTGCGgtaattactt ... tccattatagGGGGGAACCATTGACAGTCCAATGTCCGGGAACACAAACTCGAAGTTTCTG