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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAGgtatttagttacactttttatggatttatgttgtttttcttcttggaaattattctcagctatataccataccaacttaccaagtaaataagtaatttat...

Basic information

species Glycine max
transcript GLYMA15G03870.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G050984_T01 (Zea mays), 5'ss of exon 6
AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAGgt----------atttagttacactttttatgga-----tttatgttgtttttcttcttggaaattattctcagctatataccataccaacttaccaagtaaataagtaatttat--------
 ||||| || |||||||| || || || |||||| ||||||| ||  | ||||| ||||||||||| ||||| || |||||||| || ||||| || |||||          |  | | |  ||   || || |     ||||   |  || |  | ||    |||| | | |  ||||     | ||||   |   ||   ||  | | |  ||        
GATGGGACAGGGTTTGCACACAAAGGTAGCCCAAGTTGCTGCCTCGTCATTCAATATCCCTCTTAGCTCTGTATTTATATCAGAGACAAGTACTGATAAGgtgaggtccgacacatggatgtaccccttctgcatgatttttacactagttgtactttttttcattacttttatttataagttgtgccaatacaatgaggtgatggg-attccatctgtttag

upper sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 10
AATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAGgtatttagttacactttttatggatttatgttgtttttcttcttggaaattattctcagctatataccataccaacttaccaagtaaataagtaatttat--
 |||||||||||||| ||||| |||||||| ||| ||||||||||  | ||||| || || || |||||||| || |||||||| || ||||||||||||||| |  |  ||| | |    |      |    | | | || |    | ||  |       | |||           |   || |   | |  || |  |  
GATGGGGCAAGGTTTACATACAAAAGTTGCTCAAGTTGCTGCTTCTTCCTTCAATATTCCACTCAGTTCTGTATTTATATCAGAGACAAGTACCGACAAGgtaatggg--acaatgtcagagtcccattaacatctctattttgtctactttctggttctcagatattgatatgctgtgataaatttgttacaaactcgttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9566046|gb|BE475617.1|BE475617
EST:     TCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAG                         GTTCCTAATGCTTCAGCAACAGCAGCTTCTGC
genomic: TCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAGgtatttagtt ... gcaaaattagGTTCCTAATGCTTCAGCAACAGCAGCTTCTGC
EST: gi|5677911|gb|AI939041.1|AI939041
EST:     TCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAG                         GTTCCTAATGCTTCAGCAACAGCAGCTTCTG-AAGTTCTGATATGTATGGA
genomic: TCAACATCCCTCTTAGTTCTGTCTTCATATCAGATACTAGTACCGACAAGgtatttagtt ... gcaaaattagGTTCCTAATGCTTCAGCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGA