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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataagtgatgaattatgaatttctttctactgttttgtctgagttataactggttatgctttttgtttgaacgtgccag

Basic information

species Glycine max
transcript GLYMA15G02640.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 10
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataa-gtga--tgaattatgaatttctttctactgttttgtctgagttataactggttatgctttttgtttgaacgtgc-cag
|| ||||| || || |||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||    |   || |  ||||| |||       |   | ||||  | |   || | ||     |    | ||  ||| | | |   |||
TTATGGGATATAAACATGGATTCAGGCCCAGTTGCAACTTTCCAAGTTCATGAATATTTAAGACCTAAGgtgaagtttcgtaacctgaatgatggcaaaaatgtcaatgttaagac-atgtcacaatctaatgccgtgttaatttcatcttttgcag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 5'ss of exon 10
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgt---ttgataagtgatgaattatgaatttctttctactgttttgtctgagttataactggttatgctttttgtttgaacgtgccag----------------------------
 | ||||| ||||| ||| | || || || |||||||| |||||||||||||||||||| || ||||||||   |   ||  || | |   ||||||   |   ||||  ||||   |  | || |    | |    |||   | ||      | |                            
CTTTGGGATATTAACATGAACTCTGGTCCAGTTGCAACATTCCAGGTTCATGAGTATTTAAGGCCCAAGgtaattctgtacatgttaag--atgaataa-tccatacttctttga--ggatcatgaacaataaactatttcactggagtaactctgattcatgtattgcttcctgaaactgcag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 10
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataagtgatgaatt--atgaatttctttctactgt-tttgtctgagttataactggttatgctttttgtttgaacgtgccag
||||||||  | || |||||||||||||| ||||||||||| ||||||||||| || ||  | || |||||    |   | || |  |  ||||   |       | || |   | |  | | |||   | ||   |   |         |||   
TTGTGGGATCTAAACATGGATTCAGGCCCAGTTGCAACTTTTCAGGTTCATGAATACTTACGTCCTAAGgtgaattttcttatcatctgaatgagaatgaaagagccgtatcaatatctgctgtaatctgatagcgtgggtaacatcttttgcag-

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 12
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataagtgatgaattatgaatttctttctactgttttgtctgagttataactggttatgctttttgtttgaacgtgc-cag
|| |||||||| || |||||  |||| || || |||||||||||||||||||| ||||||| ||| |||||  | |   | ||  ||| |||      | |   ||    ||  | | | |      |  |  |   | | ||  | |   |||
TTATGGGACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAAACCAAAGgtcagtttcctaat--attttgagagagatacatttggcgagttggtgctttgctgaatggtattccctttgtggtcattttcag

upper sequence: GLYMA15G02640.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 10
TTGTGGGACATTAATATGGATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgt---------ttgataagtgatgaattatgaatttc--tttctactgttttgtctgagttataactggttatgctttttgtttgaacgtg-ccag
|| ||||||||||||||||| |||||||| ||| |||| |||||||||||||| ||||| ||||| |||||         ||  | ||  | |  |||   |   |   ||||||  |  | ||||  |  ||| |       || ||| |||     |  ||||
TTATGGGACATTAATATGGACTCAGGCCCAGTTTCAACCTTCCAGGTTCATGAATATTTAAGACCTAAGgtgagcttgctttcctcagaaaagtcttacacagaacaacttctacattactctctgcatgctaattttaccctctgtttctttccttctctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193343412|gb|FK308190.1|FK308190
EST:     AGGCCCCGTTGCTAACTTTTCCTTAGGTTCATGAGTATTTGAGACCCAAG                         CTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGT
genomic: AGGCCCCGTTGC-AAC-TTTCC--AGGTTCATGAGTATTTGAGACCCAAGgtttgataag ... aacgtgccagCTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGT
EST: gi|17519644|gb|BM188686.1|BM188686
EST:     CCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAG                         CTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGT
genomic: CCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataag ... aacgtgccagCTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGT
EST: gi|26057605|gb|CA800519.1|CA800519
EST:     ATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAG                         CTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGT
genomic: ATTCAGGCCCCGTTGCAACTTTCCAGGTTCATGAGTATTTGAGACCCAAGgtttgataag ... aacgtgccagCTTTGTGATTTATATGAAAATGATTCAATCTTCGATAAGTTCGAATGTTGT