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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtgaaagttactattgtttcatcattttcacaaaagcatgaaacttccgctgtcaatagtttcattcaattaattctctttctaacacccaaatatatatttttggcag

Basic information

species Glycine max
transcript GLYMA15G01390.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G074079_T01 (Zea mays), 5'ss of exon 5
TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtgaaagttactattgtttcatcattttcacaaaagcatgaaacttccgctgtcaatagtttcattcaattaattctcttt-----ctaa-cacccaaatatatatttttggcag
||  ||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||||| ||||| | |||||| ||  | |||   ||  |  | |||||||||        | || | |     ||| ||  ||  ||  ||    ||  | | | ||  | |      |   |  ||||  ||     |||| || || | |||    |  | ||||
TCCAGGGTTACTTTGCCTACATGGCCATTGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAACTTCTGTTCATTACAGAAAGACGACGCTACAAgtaacatctctgtcctgtagcaat-tcacttcaactgaacgattgggctagcacgggcacaaatgcagagcctgtgtttcttctttgcaactaatcatccgattatgccgtggttgcag

upper sequence: GLYMA15G01390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G051753_T02 (Zea mays), 5'ss of exon 11
TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtgaaagttactattgtttcatcattttcaca-aaagcatgaaacttccgctgtcaatagtttcattcaattaattctcttt-----ctaa-cacccaaatatatatttttggcag
||||||| || ||||| ||||||||||| || ||||| ||||| ||||| |||||||| ||||| |  ||||| ||  | |||   ||  |  | |||||||||        | |    |     ||| ||  | |  ||| ||    ||  | | | ||  | |      |   |  ||||  ||     |||| || || | ||     |  | ||||
TCTGGGGTTACTTTGCCTACATGGCCATCGACAGTCTACCAGGGAATCAGTTCTGGGAGAGGATACAGCTTCTGTTCATTACAGAAAGCCGACGCTACAAgtaacatctctgtcccgcagcaat-tcacttcaaaatgaaggattgggctagcacgggcacaaatgcagagcctgtgtttcttctttgcgactaatcatccgattacgccgtggttgcag

upper sequence: GLYMA15G01390.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S38_161V6.1 (Physcomitrella patens), 5'ss of exon 10
TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtga------------aagttactattgtttcatcattttcacaaaagcatgaaacttccgctgtcaatagtttcatt-----caattaattctctttc----taacacccaaatatatatttttggcag---------
| ||||| || |||||||||||||||||||| |||||||||||||| || ||||||| ||| ||    || || ||     |  |   || | |||| ||||||||||            ||||||  | || |  |  | |   |  |||| || ||  |   |   |   |||| ||  |       ||   | | | |      | |   ||  | |||  || |||             
TGTGGGGCTACTTTGCTTACATGGCCATTGAAAGTCTTCCAGGAAACCAGTTCTGGGGAAGAATTTGTCTACTCTTCAGCTCCTCCGCTAAGCGGTATAAgtaagtgattcaacagatgaaagttaaaagtgatagacaaataaaattaaagtattaatatgatgtgttgggtagtgtctctagctctgatgggtccgcctctgtgatgatgtcctga-atacgttgttgatgtgttactcag

upper sequence: GLYMA15G01390.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ22813 (Selaginella moellendorffii), 5'ss of exon 9
TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtgaaagttactattgtttcatcattttcacaaaagcatgaaacttccgctgtcaatagtttcattcaattaattctctttctaacacccaaatatatatttttggcag
|||||||||| ||||| | |||| | || || |||||||||||||| || |||||||||||  ||   ||||| ||     | || |  | | | |||| ||||||   | | |||    | || |   |||| | | |   |     |    |||| || |  |||   ||                                         
TCTGGGGATACTTTGCATTCATGTCAATCGAAAGTCTTCCAGGAAACCAGTTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagtttcaatcact----tgtccttggtttctctacaatct----ttctaactgttaagaacttctaccag----------------------------------------

upper sequence: GLYMA15G01390.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ30827 (Selaginella moellendorffii), 5'ss of exon 10
TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtgaaagttactattgtttcatcattttcacaaaagcatgaaacttccg-ctgtcaatagtttcattcaattaattctctttctaacacccaaatatatatttttggcag
|||||||||| ||||| | |||| | || || |||||||||||||| || |||||||||||  ||   ||||| ||     | || |  | | | |||| ||||||   | | |||  |  ||  |  | ||         |  |   |||   |||| |  | ||| |                                             
TCTGGGGATACTTTGCATTCATGTCAATCGAAAGTCTTCCAGGAAACCAGTTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagtttcaatcacttctccttggtt-tcttggtttctctacaatctttctaactgttagaacttttaccag-----------------------------------------