Sequence
atgc intronic sequence ATGC exonic sequenceGGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagttctaattccttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgttggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
Basic information
species | Glycine max |
transcript | GLYMA15G00250.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 5'ss of exon 10
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagt-tctaattccttgtccttgtgttgggtggaatattatac-agccttgtggaaccctttgt---tggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttt-tcgttatgattttcttttag
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TGTTTATTTGTCATACCTGGATTCTGTTAAATACTTCAGGCCTGAGATTAGAACGGTGTCTGGAGAGGCGTTACGTACATTTGTTTATCATGAAATTCTGgtaatgttctatgtttgctgagtttttctaaatttaaatgcgttgttttgccaggctggtcatactatttttgtatgcaactctttgggggggattctgccttcctccttaggctagcgtttttctgcactatctaatgctaggtctctatgtgttcag-----
upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G139977_T01 (Zea mays), 5'ss of exon 9
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaa----cctttagttctaattccttgtccttgtgttgggtggaatattatac-agccttg--tggaaccctttgttggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
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TGTTTATTTGTCATACTTGGATTCTGTTAAGTACTTCAGACCTGAGATTAAAACAGTATCTGGAGAAGCCTTGCGTACATTTGTGTATCATGAAATTCTGgtaatttgccatccatgctgactttttgtgactaatacaaatttattgccttaccaggtttggccaaaactgtttggggggaccatatgactggaaactgttttttttagctaggatttgttcttggt------ctaatctgttctcattgtgtacag-------
upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G12980.1 (Arabidopsis thaliana), 5'ss of exon 10
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagttctaattccttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgttg--gagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
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GGTTTACCTTTCCTATCTGGACTCAGTTAAGTACTTCAGACCTGACGTTAGAACAGTATCTGGAGAGGCCCTCCGTACGTTCGTATACCATGAAATTCTGgtaagccgcatttct----tctgatcctagttgctttcaggcacctgtgttgcttcacaagtcttatcaacaatgggcttttcggattgcag--------------------------------------------------------------------
upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G55970.1 (Arabidopsis thaliana), 5'ss of exon 9
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacc---tttagttctaattcc-ttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgttggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
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---------------------------------------ACCT----TTCGAACTGTGTCTGGAGAAGCCCTTCGCACCTTTGTGTACCATGAAATTCTGgtaagccgttttatctctaatcccatcttctttaggtttcgtgttttgcttcacgagtacatgaaacttatcattg---ttacgaatttgcag---------------------------------------------------------------------
upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 5'ss of exon 9
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagttctaattc---cttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgt-tggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
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TGTTTATCTCTCATATCTGGATTCTGTGAAGTACTTCAGGCCTGAGATTAAATCAGTGACTGGGGAGGCTCTCCGTACATTTGTTTACCATGAAATTCTGgtgagttttagtattacgccaatcttttatttattcttgatgagcaattcttatggtttg-gaatctttttatattgggctattggcttatatatccgattctctt-tccag--------------------------------------------------
upper sequence: GLYMA15G00250.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ09423 (Selaginella moellendorffii), 5'ss of exon 5
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagttctaattccttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgttggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
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GCTTTATATTGCTTACTTGGACTCTGTCAAGTATTTTCGGCCCGAAGTGAAAACCGTTACGGGTGAAGCTCTTCGAACATTTGTTTATCACGAAATCCTGgta--cttcgtttgtaattgtttg--atgatgcaggttaacaagttttgta--tttgcag--------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193454336|gb|FK420861.1|FK420861EST: AAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTG ATTGGATACCTTGA
genomic: AAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaaccttta ... tttcttttagATTGGATACCTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTAACTGGAGAAGCTCTTCGGACATTTGTTTATCATGAAATTCTGgtaacctttagttctaattccttgtccttgtgttgggtggaatattatacagccttgtggaaccctttgttggagtcattcaagttctgatttgtttccttcctgtagttctattctatataaatagttgagtagttttcgttatgattttcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC