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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGCATCTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGgtatttacatgttatttgcattttgatatcctaattctattgattttttcttaattctattttattttttggattcag

Basic information

species Glycine max
transcript GLYMA14G24510.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G24510.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G031529_T01 (Zea mays), 5'ss of exon 11
GAAGAAGCATCTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGgtatttacatgttatttgcattttgatatcctaattctattgattttttcttaattctatttt--attttttggattcag--------------------
|||||||||| | || || || || |||||||| ||||| ||||| |||||||||||||||||   ||||||||||||   ||| ||||  ||| ||||||||   ||   |   |    ||||| | ||||  ||       |||    |  || ||  | |  || |   | || |                      
GAAGAAGCATGTTAAGAAGGGCAAGAATGTTTCAATGGGATTTGGTTTTGTTGAGTTTGACTCTGTTGAAACTGCTACCGGTGTGTGCAAGGATCTACAGgtaac-acccatccctcctcttttgttttccttttttcgcctctttcccttagatgctcatatagatgtgcagcatgctaaatgtttctttggttcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207679883|gb|GD664379.1|GD664379
EST:     TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAG                         GGGACTGTTTTGGACAGCCATGCTCTAATTTTACAACCTTGTCATGTCAAG
genomic: TTGAGTTTGACTCCCCTGAAACTGCTACAAATGTTTGCAGAGATTTACAGgtatttacat ... ttggattcagGGGACTGTTTTGGACAGCCATGCTCTAATTTTACAACCTTGTCATGTCAAG