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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAgtaagtccttccggaaagtagttgttgcatttcctcgtacttcattgccaaatctttcacagcaatagtgggattttaggctaatgaatacattcttagg...

Basic information

species Glycine max
transcript GLYMA14G10130.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10130.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 5'ss of exon 8
GCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAgtaagtccttccggaaagtagttgtt-gcatttcctcgtacttcattgccaaatctttcacagcaatagtgggattttaggctaatgaatacattcttagg----
||| || |||||||| || ||||| ||  |||| || || ||||| ||||| |||||||||||||| |||||||||||||||| | |    ||||| ||  || | | || ||     || |    |  ||  ||   |   ||    | ||   ||| | |  ||  ||||  |  |    
GCATCATCAACATGGAAGATGGCAGGCTCGGATTGGGAGGGTTGCTGGAAACAAGGACCTTTATCTCGGGACATTCAgtaagttcattt--aaagttgtaatttgtagttact---gttttaacttcttatgcttattaatcatcccagaatggaaggatgaccaagccatttgtgtgtcaa