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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgcttatgtttaaatataggcataaatttttactctatttaatttggactgtgtgattttgattcctcaagtttttttcaagtcaatt...

Basic information

species Glycine max
transcript GLYMA14G07120.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 5'ss of exon 12
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgcttatgtttaaatataggcataaatttttactctatttaatttgga----ctgtgtgattttg--attcctcaagtttttttcaagtcaatt----
|| ||||| || |||||||| || ||||||||||| || || || ||||| ||||||||||||   || ||||| ||||||||| | || || ||||||||    ||| || ||    |||| |     |     || |  || ||||  || | ||     | | |  |||||  ||| || |  ||   |      | | |    
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGAAGTAATAAGCTTGTCTCTCAAATCAAGGCGTCAACTAAGATTCCTGTTCTTGGGCATGCTGgtaa----attctgtttgaacttaagttcttaccactcttatggctttattggatgttgagtttttttttctttttgctatttctgacattccatatttccccactgcag

upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
lower sequence: AC203754.4_FGT008 (Zea mays), 5'ss of exon 12
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgct----tatgtttaaatataggcataaatttttactctatttaatttggactgtgtgattttgattcctcaagtttttttcaagtcaatt
||  |||| ||||||||||| || ||||||||||||||||| || || ||||| ||||||||||  || ||||| || |||||| | ||||| ||||||||   |||  | |      ||||||   || |  |||   |   |||  |||  || |  |        | ||||||| || ||  |||  || |       
CTTCATGATGTAATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCACAAATCAAGACATCAACTAAGATCCCTGTTCTTGGTCATGCTGgtaaatttatcttccaatagcatgttttggtacaaacatt--tcactacaatatcaaaatatg--cagactagtttgatttctgaatctttcctctatag----

upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G094309_T01 (Zea mays), 5'ss of exon 5
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgct----tatgtttaaatataggcataaatttttactctatttaatttggactgtgtgattttgattcctcaagtttttttcaagtcaatt
||  |||| ||||||||||| || ||||||||||| ||||| || || ||||| |||||||||   || ||||| || |||||| | ||||| ||||||||   |||  | |      ||||||   || |  |||   |   |||  |||  || |  |        | ||||||| || ||  |||  || |       
CTTCATGATGTAATTGATCTTGTCATTCCAAGAGGTAGCAATAAGCTGGTTTCACAAATCAAGGCATCAACTAAGATCCCTGTTCTTGGTCATGCTGgtaaatttatcttccaatagcatgttttggtacaaacatt--tcactacaatatcaaaatatg--cagactagtttgatttctgaatctttcctctatag----

upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G375504_T03 (Zea mays), 5'ss of exon 12
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgcttatgtttaaatataggcataaatt-tttactctatt--taatttggactgtgtgattttgattcctcaagtttttttcaagtcaatt
|| ||||| || |||||||| || ||||||||||||||||| || || ||||| ||||||||    || ||||| || |||||  | ||||| || |||||   |||  | |  ||  ||   | | || | |||   |  |||  | |  |||  |  || |  || ||| |||| || || ||||| || |       
CTTGATGATGTCATTGATCTTGTCATTCCAAGAGGCAGCAATAAGCTGGTTTCGCAAATCAAAGCATCAACTAAGATACCTGTCCTCGGTCATGCGGgtaaatttatctt-ccaatagtttgtttttggtacaaacagtccactacaatactaaaatatacggactggttt-gatttctgaattttttctctatag----

upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
lower sequence: AT3G55610.2 (Arabidopsis thaliana), 5'ss of exon 13
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactattatgcttatgtttaaatataggcataaatttttactctatttaatttggactgtgtgattttgattcctcaagtttttttcaagtcaatt
|| |||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || |  || || ||||| || ||  |||| || ||||||| |  ||| | | | | |||  | ||       |  | || | |    ||    | ||  |        | |||  |   || |||            
CTTGATGACGTTATTGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTTCTCAAATAAAAAACTCGACGAAAATCCCAGTGCTAGGCCATGCTGgtatgtttat-aagttca-gttccatta-------agttcttaagttggattggcctagagagaacatggcttattttttgggtgtttccag--------

upper sequence: GLYMA14G07120.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 13
CTGGATGACGTAATTGATCTGGTGATTCCAAGAGGCAGCAACAAACTTGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgta-------agacta---tta---tgct-tatgtttaaatataggcataaatttttactctatttaatttggactgtgtgattttgattcctcaagtttttttcaagtc---aatt-----------------------
|| ||||| || || || || || || |||||||||||||| ||||||||||||||||| |||  ||| || |||||||||||| | || || |||||||       ||||||   |||   |||| | | |||| |||    ||  | | | | ||| |  |  |    ||  | |  |||| ||      |    | |     |    ||||                       
CTTGATGATGTGATCGACCTTGTAATCCCAAGAGGCAGCAATAAACTTGTTTCTCAAATAAAGGATTCAACAAAAATTCCTGTTCTGGGCCATGCTGgtatgatgacagactaaacttaagatgctatttatttatataatatcaacagtatatgctcaacctggtc-aaacaattttctttttatgggaagaacaatgtctgcatttagaattaaagatacagcatttgctctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193335926|gb|FK300626.1|FK300626
EST:     TGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTG                         ATGGAGTTTGCCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCGA
genomic: TGTTTCTCAAATCAAGAGTTCCACTAAAATTCCTGTTTTAGGTCACGCTGgtaagactat ... actaatccagATGGAGTTTGCCATGTCTATGTTGATAAGTCTGCTAATGTGGAGATGGCGA