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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctcagttcataactttgattttttataatatatagtagaatgcatgttgacagattgccttgtgttttgtagaaaaaagtctatcatagtgct...

Basic information

species Glycine max
transcript GLYMA14G00760.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G00760.2 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM5G830250_T01 (Zea mays), 5'ss of exon 11
GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctcagttcataactttgattttttataatatatagtagaatgcatgttgacagattgccttgtgttttgtagaaaaaagtctatcatagtgct
|||||    || || ||||||||||||||  |  | || ||||||||||| |||||||||||||||||| |||| || ||| | || |||  | ||    | |  |   || || |||| ||| | |  |    |  ||||| | |  |    || | | ||       | |  |  |         
GAAAAGACTAATGTTCATGGTGGAGCTGTATCTTTAGGACATCCTCTTGGGTGCAGTGGTGCTCGCATTTTGgttactcttcttggtgtaaattctagtcttaaga---tgtttgtttacaatctgttttg---tttatgtt-atatgtatatttatatattcctatgtatacccattt--------

upper sequence: GLYMA14G00760.2 (Glycine max), 5'ss of exon 10
lower sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 13
GAAAAAGTAAACGTACATGGTGGAGCTGTTGCACTGGGTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctcagttcataactttg-attttttataatatatagtagaatgcat-gttgacagattgccttgtgttttgtagaaaaaagtctatca-tagtgct--
|||||||| || || |||||||| |||||  |  |||| |||||||| ||||||||||| || || ||  |||| |||||||||||||||| |  |  | | | | ||||  ||  | | ||||||  | |    |  || ||  | | |  || |       |  |  |     ||| ||  |||      
GAAAAAGTTAATGTGCATGGTGGTGCTGTATCCTTGGGACATCCTCTAGGTTGCAGTGGAGCCCGAATCTTGGTCACACTTTTGGGGgtatat-ttgtgctgaaacctttacatgctctgtaatatcaactgagttaaattgtcaaaaaaaagcatcac----tacattactttctctgtctctagcttccc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10848225|gb|BF070769.1|BF070769
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|192329989|gb|FK021575.1|FK021575
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|17021784|gb|BM092818.1|BM092818
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|15812294|gb|BI784569.1|BI784569
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|31472565|gb|CD414593.1|CD414593
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|151406879|gb|EV276694.1|EV276694
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|298184901|gb|HO030114.1|HO030114
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|192313001|gb|FK003653.1|FK003653
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|31472065|gb|CD414093.1|CD414093
EST:     GTCATCCTCTTGGTTCCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|192313633|gb|FK007617.1|FK007617
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|12689377|gb|BG155774.1|BG155774
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|254347470|gb|GR853719.1|GR853719
EST:     CTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: CTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|192328380|gb|FK020091.1|FK020091
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGA-GAATGGGAAG
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAG
EST: gi|120491401|gb|EH219568.1|EH219568
EST:     CTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: CTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|15203843|gb|BI426611.1|BI426611
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|209708680|gb|BW678861.1|BW678861
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAA
EST: gi|10256517|gb|BE824283.1|BE824283
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
EST: gi|192313632|gb|FK007616.1|FK007616
EST:     GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGG                         GTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA
genomic: GTCATCCTCTTGGTTGCAGTGGTGCTCGCATTCTGGTGACACTTTTGGGGgtatgtgctc ... tcacctgcagGTACTGAAGCAGAAGAATGGGAAGTACGGAGTTGGTGGCATTTGCAATGGA