1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGCgtatgctctctctcttccaccctggttcaaagttgaattgatgtattgcaatatcatttacctagattttcttttctttctctacttagttaactttactatatcttttgttattttag
species | Glycine max |
transcript | GLYMA13G39990.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGC ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTEST: gi|13181457|gb|BG352797.1|BG352797
genomic: GAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGCgtatgctctc ... gttattttagATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGT
EST: GAAGAGAAACCAAGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGC ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTEST: gi|10234562|gb|BE803450.1|BE803450
genomic: GAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGCgtatgctctc ... gttattttagATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGT
EST: CCAGGTTGGTGTAGTGAT-CACATTTTGCTTCCTTGTGCTGC ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGTEST: gi|18848780|gb|BM567892.1|BM567892
genomic: CCAGGCTGGTGTAGTGATCCACA-TTTGCCTCCTTGTGCTGCgtatgctctc ... gttattttagATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGT
EST: GAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGC ATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGT
genomic: GAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGCgtatgctctc ... gttattttagATTTGTGGAAATTATGGCACCTGTCTTTTCTCGTGAGGCTTGGCGTTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGACAGAAGAGAAACCAGGCTGGTGTAGTGATCCACATTTGCCTCCTTGTGCTGCgtatgctctctctcttccaccctggttcaaagttgaattgatgtattgcaatatcatttacctagattttcttttctttctctacttagttaactttactatatcttttgttattttag
- - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC