1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaatttaatcttatatattgtaagtgtaaaatttttttactatcaattaataagaataagaaattatgttagtatgacttttaagataattatcat...
species | Glycine max |
transcript | GLYMA13G33920.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGAGTTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|31475937|gb|CD417965.1|CD417965
genomic: CAGAGT-ATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|8825720|gb|BE209386.1|BE209386
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|22931171|gb|BU548310.1|BU548310
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|31469225|gb|CD411253.1|CD411253
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|31472409|gb|CD414437.1|CD414437
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|151404895|gb|EV274709.1|EV274709
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAAEST: gi|151397360|gb|EV267233.1|EV267233
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
EST: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAG GGTGCAAGCATTGAAGCCCTTGAAAGTTTCAG-AGCATTCCCTTCAACAA-
genomic: ACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaattt ... tattgaatagGGTGCAAGCATTGAAGCCCTTGAAGGTTTCAGGAGCATTCCCTTCAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGCTACAGAGTATAATCCTAACCTCCTCAAATACTCTTGCCAGATTGAATGCAGgttagaatttaatcttatatattgtaagtgtaaaatttttttactatcaattaataagaataagaaattatgttagtatgacttttaagataattatcat
- - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaataaga