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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatcattcatcattttagataaaggaattactcattctataagatgtcattatttcttag

Basic information

species Glycine max
transcript GLYMA13G33390.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatc--attcatcattttagataaagga-attactcattctataagatgtcattatttcttag-------------------------------------------------------------
 |   | ||||| ||| |  | || |||||||| |||||||| || ||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||||   |  ||||   |||| |  |    ||| |||| | | |||   | |||  || || |    | | |  |  |   | ||                                                             
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaacttt--atatatatatatcattca---tcattttagataaaggaattactcattctataagatgtcattatttcttag------------------
 |     || || ||| |  | ||  ||||||| |||||||| | |||||| ||||| ||||| ||||| || ||||| ||||||||||| |||||||||||| |   || |    |||   ||||   ||    | || | |   | | | | || | |   ||| | ||||  ||                           
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatgatgctctcagcataagaatattgatctaatttatgtcattgagaagtactattgacattatta-atgttcttgccatgccatttttacaaatatcttag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatca------ttcatcattttagataaa-ggaattactcattctataa---gatgtcattatttcttag-------
 |   | || || ||| | || ||  ||||||| |||||||| || ||||| || || ||||| ||||| || ||||||||||| ||||| ||||||||||||   |    | | ||  ||  |||         | |   |  | |||     |||    ||  | |||   ||     |||| | |||        
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagc------aactttatatatatatatcattcatcattttagataaaggaattactcatt---ctataagatgtcattatttcttag
 |   |||| || ||  |  | ||  ||||||| ||||||||||||||||| || || ||||| ||||| || ||||||||||| || |||||||||||||||||       | ||  | ||| | |  | | |    | |     |   |  |||| | |||      | | ||    || |||| |||
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaagacggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcctgacattgttttttttcctag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatat----atatatatcattcatcattttagataaaggaattactcattcta-----taagatgtcattatttcttag-------
 | | ||||||||||| |  | || |||||||| || ||||| || || || ||||| ||||| ||||||||||||||||| || ||||||||||| ||||||    |   || ||    ||| | |    |||||| |  | |||     |||||| ||| |      |    |||  |||||  |||        
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactaca-atagtaatattactgattatgatatctgttttgttgttattatttaatctttag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgta----agcaa--ctttatatatatatatcattcatcattttagataaagga-attactcatt-ctataagatgtcattatttcttag
 |   |||| || ||| |  | ||  ||||||| ||||||||||||||||| || || ||||| ||||| || ||||| || || || |||||||||||||||     |||   ||| | |||   |  |      | || | ||     ||| |||||| | |  |    ||  |  || ||||||||
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacgagggcagggcttgaaataacaaagttgaaattgatataagccttgggatattactaactgttgcttgacattgttttttcttag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 13
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatcattcatcattttagataaagga-attactcattctataagat-gtcattatttcttag---
 | | | || ||| || |  |||| |||||||| ||||| ||||  ||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||  ||  || |    |||||  |  | |       ||| ||| ||    |||   |  |||  ||  ||||| ||| |      
ATTTTCAGATATAAAACCTCTTATTCGATCAGTTCTTGACGGGTACAATGTATGTATCTTTGCATATGGTCAGACAGGATCAGGGAAAACTTACACAATGgtactca--ttcactagtatatcacgattaagtggccagacaaatgatgccactacattcataccattatcattgtttttgtccag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 13
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatcattcatcattt-tagataaaggaattactca-ttctataagatgtcattatttcttag
 | | | ||||||  | |  |  |  | ||||||||||||||||  ||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||| | |        | | | |   | | |   ||  |||  | |    | |  |  || ||       ||  | | | | ||
CTTTTCAGACATAAGACCGCTGGTTAGGTCAGTACTTGATGGGTACAATGTTTGTATATTTGCATATGGCCAGACAGGATCAGGGAAAACTTATACAATGgtatgtattcactgttgtttctgagagtaagatttcataggaataacgctgatgcgcttttaccttcgttccctttctttcag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 13
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagcaactttatatatatatatc-attcatcattttagataaaggaattactca----ttctataagatgtcattatttct-tag
|| | ||||||  ||| ||||  ||||||| || |||||||| | |||||||||||||||||||||||| || |||||||| || || || |||||||||||| | |  | ||||| | |   || |     ||| |  | | |     | | | |    || | |||  | |  |  || || |||
GTTTTCTGACACTCAACCCTTGGTACGATCTGTTCTTGATGGCTATAATGTATGTATATTTGCTTATGGTCAAACTGGTTCGGGCAAGACATACACAATGgtatgaacttgtatatgttttagtctacatggcatatgtgttgatattttcaataaaaacttgtgtaatgtattgtctttcctctag

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S34_101V6.1 (Physcomitrella patens), 5'ss of exon 14
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaag--caactttatata--tatatatcattcatcattttagataaaggaattac-tcattctataagatgtcattatttcttag--------------
 | |   |||| |||  | || ||||| || ||| | ||||| |||||||||||||| |||||||||||||| || || || || || || || || |||||||   | ||||||  |   | ||| |  |||| |    |||  |    |||||  | ||||  ||  ||  |  ||||| |                 
TTTTCTAGACACACAGCCATTGATACGGTCTGTATTGGATGGATTTAATGTATGTATCTTTGCTTATGGCCAAACGGGGTCTGGAAAGACCTATACCATGgtaatgtccactttacttcattttatttagttcagccagatagcaatctaaattatatgattccctaccattgccatatttttgccatgcttaagttgtc

upper sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
lower sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagc----aactttatatatatatatcattcatcattt-tagataaaggaattactcattctataagatgtcattatttcttag
 | |   ||    ||  | || || ||||| || |||||||| || || || ||||| ||||| ||||| ||||||||||| || ||||| || || |||||||||    | ||   |    || | |   | | | | | | |||  ||                                    
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatttgtgtattaacgtctattgatgcag------------------------------------