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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTGGATCCGTGTGAAGACCTAACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcag

Basic information

species Glycine max
transcript GLYMA13G32940.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 11
GAGGTGGATCCGTGTGAAGACCTAACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcag
   || ||||| ||||||||| |||| | |||||| || || ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||||| |||||| | | ||  |  ||     ||| |   |    |||          |||     |||  |||  || | |||  | || |||    || ||   ||| |     ||    | | |  || |||       | |   |   | ||||    |  |  ||     
---GTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccct-----aagcatgtgggagcat----------ttt-----tttgcttatctgttctttccacatactt----attttgcttgagttt--tttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag----

upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 10
lower sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
GAGGTGGATCCGTGTGAAGACCTAACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaattctaccctaaaacatgtttatccatttattttcgtgtaatcag
||||| ||||| ||||||||| |||| | |||||| || || ||||| ||||| ||||| ||||| |||| ||| ||||| ||||||||||| |||||| | | ||  |  ||     ||| |   |    |||          |||     |||  |||  || | |||  | || |||    || ||   ||| |     ||    | | |  || |||       | |   |   | ||||    |  |  ||     
GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccct-----aagcatgtgggagcat----------ttt-----tttgcttatctgttctttccacatactt----attttgcttgagttt--tttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag----

upper sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
GAGGTGGATCCGTGTGAAGACCTAACTGATGATGACATCCGTACTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtctttttacctttctttttaaagaaaaagaagacatagaaattatatttagaagtttctttagttgatttttgtaaatgctttgctatattctgtgaatccaaatttgcataaaaaaaat-tctaccctaaaacatgttta-tccatttattttcgtgtaatcag
||||||||||| ||||| ||  | |||||||||||||| || ||||| || |||||||| || || || | ||| ||||| ||||| ||||||||| ||||| |     |  | |||          |   |   ||   || |||| ||| ||  ||    | |  ||   || || ||||| ||  | |  | || | | ||| | |      ||| |||| | ||| | ||  ||| | |           | |  ||||
GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttcttcctaagttctctgag--taaattttgaatttatttc---taaacttca-aattgttttgccattattta-gcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254339195|gb|GR847912.1|GR847912
EST:     CTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAA                         GTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCA
genomic: CTGCCATACAGAATGCTACTGGGCCCAAATCAGCATTGTTTGTTCCAGAAgtaggtcttt ... gtgtaatcagGTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCA