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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttttgcttttatgcaaataagatttgcttcacatttcaaacaaaatttacttattattatttcactttgtgcttgcag

Basic information

species Glycine max
transcript GLYMA13G31830.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 8
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttttgcttttatgcaaataagatttgcttcacatttcaaacaaaatttacttattattatttcactttgtgc----ttgcag---------------------------------------
|||||| ||||||||||| ||||||||||||||| |||||||| ||||||   |||  ||    | |  |     |||| ||    | |  | |   | || ||| |    ||   |    | |   |||    ||||||                                       
GACTGAGAGTGCTTTGAAGTTTGGATGGTTTTTCCTGTTTTACTTGgtaa---gacccttaccttctggtaactgtaaggttaaaatga--tctagtataagattaatggtttgccacactattggttgcaaaattgcagatattccgtgcagtgctaacagtgtttgccccctttcag

upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 5'ss of exon 8
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattga-ctgttttgcttttatgcaaataagattt--gcttcacatt-------tcaaaca-aaatttacttattattatttcactttgtgcttgcag-----------------
 ||||| ||||||||||| ||||| ||||||||  |||||||||||||||| | | ||    |     | |   | | | || |  || | | |||        ||| ||  ||   | | ||   || ||||       ||  ||                  
AACTGAGAGTGCTTTGAAGTTTGGGTGGTTTTTTCTGTTTTACCTGgtaaaataatctaaactaaaggtttttcagtcatatcttagcattaaattagatgagccaagcatgaacaaattcatctgtacttcatagctaactaacaatctttgtccatttccag

upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 9
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgttttgcttttatgcaaataagatttgcttcacatttcaaacaaaatttacttattattatttcactt--tgtgcttgcag
|||||| ||||| ||||| ||||||| ||| |||||| |||||||||||| |     ||  |  || ||||  | |||||| | |     ||||  ||     |      || ||| ||  | ||  |||  ||||||
GACTGATAGTGCCTTGAAGTTTGGATTGTTCTTCTTGGTTTACCTGgtaagtgaggagtccttgttatatgttagtaagatattcggtg-attttgaatgtg-tgggaacataattcttgaatttcctgtctttgcag

upper sequence: GLYMA13G31830.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G169773_T02 (Zea mays), 5'ss of exon 8
GACTGACAGTGCTTTGAATTTTGGATGGTTTTTCTTGTTTTACCTGgtaaattgactgtt-ttgcttttatgcaaataagatttgcttcacatttca--aacaaaatttacttattattatttcactttgtgcttgcag
|||||| ||||||||||| ||||| |||||||||||||||||||| ||||  | |   |   | | | |||  | | || || |  |||||        ||  |  |||||   ||                       
GACTGAAAGTGCTTTGAAGTTTGGGTGGTTTTTCTTGTTTTACCTTgtaagattatcatcacttcatatat-tagaaaaaatatatttcactccctgctaatgatctttaccccttccag-------------------