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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtccttaaattatctttcttcatcaaatttgtgctttggcagtaaactatttgtacagaatttcaaaattaggaataaaattgatactgtttttaa...

Basic information

species Glycine max
transcript GLYMA13G30060.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30060.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 5'ss of exon 11
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtccttaaattatctttcttcatcaaatttgtgctttggcagtaaactatttgtacagaatttcaaaattaggaataaaattgatactgtttttaa-
||| |||||||||||| | ||||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||     |   | | || |  | ||      |  | ||| |      |||||       ||   |   |||  |||    |   | ||| | |  | 
TGACGCATGTGCACATTCCTTCTTTGATGAGCTACGAGAGCCCAATGCACGCCTGCCAAATGGTCGTCCATTCCCTCCTCTGTTCAACTTCAAGCATGAAgtaagtaaacgag--aacattttcaaacagtcgctttttatggtacatttatatttacctgtcatgg-atgcttatcaatgc--tcatttctggtatgcag

upper sequence: GLYMA13G30060.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os05g11730.1 (Oryza sativa), 5'ss of exon 11
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtccttaaattatctttcttcatcaaatttgtgctttggcagtaaactatttgtacagaatttcaaaattag---gaataaaattgatactgtttttaa----------
||| |||||||||||||||||||||||||| || ||||| || ||||| ||| ||||||| || ||||||||||| ||  |||| |||||||| || |||||||||   | |   ||    | | |||   |       ||   |      |||   |    || |    | |      |      |||| | |||  |||            
TGATGCATGTGCACATCCTTTCTTTGATGAGCTGCGAGAGCCGAATGCACGCTTGCCAAACGGACGTCCATTTCCACCACTATTCAACTTCAAACACGAAgtaagtgaatcag--atgaaacataatctgctacacaacttcagatcttggtatccatgagaaaatgtgtactctccttggtgctcattggtgctgccttttggtctctacag

upper sequence: GLYMA13G30060.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv10s0003g01480.t01 (Vitis vinifera), 5'ss of exon 11
TGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtccttaaattatctttcttcatcaaat-ttgtgctttggcagtaaactatttgtacagaatttcaaaattaggaataaa-attgatactgtttttaa-
 ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| || ||| | || || || ||||||||||||||   ||  ||| | ||| |  ||    | || |   |      ||||||| ||        | || |   |    ||     |  ||| | | || |  
AGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCCCGCCTGCCAAATGGTCGTCCATTACCACCTCTCTTCAATTTTAAGCAGGAAgtaagggtttttattttatttttatattttttattctatataatttctaaactaatttcttg---tctccagcctgaacatgtctgtccataatttcttcatg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199982|gb|BI424109.1|BI424109
EST:     GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
EST: gi|31471662|gb|CD413690.1|CD413690
EST:     CTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: CTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
EST: gi|33390223|gb|CA853430.1|CA853430
EST:     GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
EST: gi|21888427|gb|BQ741640.1|BQ741640
EST:     GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
EST: gi|193410696|gb|FK375885.1|FK375885
EST:     GCCTGCCAAATGGTCGTCCATTTCCNCCTTTATTTAACTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
EST: gi|26057508|gb|CA800422.1|CA800422
EST:     CCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: CCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
EST: gi|14991336|gb|BI317009.1|BI317009
EST:     GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAA                         TTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG
genomic: GCCTGCCAAATGGTCGTCCATTTCCTCCTTTATTTAACTTCAAGCAGGAAgtaagtcctt ... ctgtttccagTTATCCGAAGCTTCTCCAGAGCTTGTGAACAAAGTGATACCTGACCACATG